Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C24
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        29   2.8  
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_6008| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                  27   6.5  
SB_21196| Best HMM Match : I-set (HMM E-Value=1.3)                     27   8.6  
SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 429 SVFLVTFESGGQGPPDQMFDPIS 497
           + FL T ES G+G PD+M D IS
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQIS 51


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 429 SVFLVTFESGGQGPPDQMFDPIS 497
           + FL T ES G+G PD+M D IS
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQIS 31


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 429 SVFLVTFESGGQGPPDQMFDPIS 497
           + FL T ES G+G PD+M D IS
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQIS 51


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 247 RRHRTNILSQ*ISCCAPSSR-LLFVTMFCFDYVNLICYLIIITSNWE 110
           R+  T++    IS  A  SR  + + + C +    +C  + +TSNWE
Sbjct: 179 RKRNTSVNRSNISASARKSRSCILLRLCCSENRKTMCVPLALTSNWE 225


>SB_6008| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 866

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 354 RMPETSKIMNGYAKTNGHSYDMEDGSVFLVTFESGGQGPPDQMFD 488
           R P   K++    +  GH +  E  +   VT +SGG    D  FD
Sbjct: 683 RAPSAGKLIGYLVEDGGHVFQGETYAEIEVTNDSGGDDDNDGEFD 727


>SB_21196| Best HMM Match : I-set (HMM E-Value=1.3)
          Length = 250

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 466 PCPPDSNVTRNTEPSSIS*LCPLVFAYPFIIFDVSGILNLELAHKNNPKDF 314
           P PP+     + E +  +  CP  F YP  + DV+ +LN E+    + + F
Sbjct: 123 PPPPEVPEIYDIEATFANFTCPEAFGYP--VPDVAWVLNGEVHQNGSSRHF 171


>SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 TRTWSAARYLLAQNIRPVAPHRPYKY 265
           ++ W+   Y+L +N+R V  H+  KY
Sbjct: 86  SKLWTLVLYVLRKNLRTVIQHKTVKY 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,578,406
Number of Sequences: 59808
Number of extensions: 308569
Number of successful extensions: 1540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)