Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C24
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37410.1 68418.m04500 hypothetical protein contains Pfam PF04...    31   0.33 
At4g37420.1 68417.m05297 hypothetical protein contains Pfam prof...    27   7.0  
At4g32010.1 68417.m04557 transcriptional factor B3 family protei...    27   7.0  
At3g16540.1 68416.m02112 DegP protease, putative contains simila...    27   7.0  
At1g03960.2 68414.m00382 calcium-binding EF hand family protein ...    27   7.0  
At1g03960.1 68414.m00381 calcium-binding EF hand family protein ...    27   7.0  

>At5g37410.1 68418.m04500 hypothetical protein contains Pfam
           PF04510: Family of unknown function (DUF577);  common
           family comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 615

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +3

Query: 21  VAYQKYLNNIS*KLINHKCLFSGLVTKVKASQLLVIIIK*QIR-LT*SKQNIVTNSRREL 197
           +AY K +N++  K +  + +  GLV +  A + + II+K Q+   + S+  +V      L
Sbjct: 512 IAY-KMINSV--KELVERGMEVGLVRR--AFRDVEIIVKDQLEWYSTSEYKLVKGLLWRL 566

Query: 198 GAQQDIYWLKIFVLWRLTDLINIGVFSRQASFPQ 299
            A + + W   FVLWR+  +I+ GV   +   PQ
Sbjct: 567 YAIKGMRWESKFVLWRINVIIDRGVKEEEKELPQ 600


>At4g37420.1 68417.m05297 hypothetical protein contains Pfam profile
           PF01697: Domain of unknown function
          Length = 588

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 449 ECNQKHRAIFHIITVSVSFCISIHNF*CLRHSEFRVS 339
           E +Q+H++I  +  V  S   +IH+F   R  E+RV+
Sbjct: 460 EEDQRHKSIVRLSAVEHSLYTAIHHFGLKREYEWRVA 496


>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
           GI:7801376; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 780

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -3

Query: 364 SGILNLELAHKNNPKDFP 311
           SG++++ ++H++N KDFP
Sbjct: 97  SGLISMNVSHESNGKDFP 114


>At3g16540.1 68416.m02112 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 555

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 248 HRPYKYRRILAPGLFSTVLIQGEIFRVIFVS*L*IQNAGDIKNYEWICK 394
           H   +Y R   PGL S++        V+  S   +  AG +  Y +IC+
Sbjct: 8   HTVGRYSRARVPGLLSSLFFYRSCNNVLTNSLPTVTTAGRVSRYGYICR 56


>At1g03960.2 68414.m00382 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 389

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -2

Query: 323 ERFPPELTLWKRGLAREYA------DIYKVGEAPQDEYFEPID 213
           ER  P LT W R   REYA      D+ +V     D + EP++
Sbjct: 344 EREDPNLTEWDRFAQREYARLSMEEDVDEVSNGSADVWDEPLE 386


>At1g03960.1 68414.m00381 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 529

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -2

Query: 323 ERFPPELTLWKRGLAREYA------DIYKVGEAPQDEYFEPID 213
           ER  P LT W R   REYA      D+ +V     D + EP++
Sbjct: 484 EREDPNLTEWDRFAQREYARLSMEEDVDEVSNGSADVWDEPLE 526


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,919,158
Number of Sequences: 28952
Number of extensions: 219310
Number of successful extensions: 482
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)