Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C23
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   4.5  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   5.9  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 336 LLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDP 199
           L DP +I +      P H+  P  R+  LP    + DY+  I+  P
Sbjct: 5   LKDPVKIFEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTP 50


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 246 DLVQIPDYHLQILP 205
           DL+ + DYHL +LP
Sbjct: 152 DLIWVQDYHLMVLP 165


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 318 IPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHR 178
           I D   ++ P    I D     + DL +     + I PDP + L HR
Sbjct: 261 IMDQVAELTPTEDSIYDGIDYTMEDLKEAVGADISIYPDPKRTLQHR 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,922
Number of Sequences: 5004
Number of extensions: 18284
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)