Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C23
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0075 + 14846108-14847794,14847858-14848249                       28   3.4  
11_01_0034 + 254163-254251,254793-254892,255130-255231,255700-25...    27   6.0  
08_02_0480 + 17632176-17632814,17633838-17633906                       27   6.0  
04_03_0489 + 16503325-16503747,16503916-16503978                       27   7.9  

>02_03_0075 + 14846108-14847794,14847858-14848249
          Length = 692

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 92  RRFWLRWTRPGW 127
           R FW+ W RPGW
Sbjct: 113 RHFWIPWFRPGW 124


>11_01_0034 +
           254163-254251,254793-254892,255130-255231,255700-255756,
           255778-255783
          Length = 117

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 89  LRRFWLRWTRPGWIW 133
           +RR  L W +PGW W
Sbjct: 87  MRRLLLLWQKPGWAW 101


>08_02_0480 + 17632176-17632814,17633838-17633906
          Length = 235

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 206 GRIWRW*SGIWTRSGR--IWWR 265
           GRIWRW SG+ T  G   +W R
Sbjct: 156 GRIWRWWSGMTTGGGGSILWMR 177


>04_03_0489 + 16503325-16503747,16503916-16503978
          Length = 161

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 170 PGHR*SRFWSGSGRIWRW 223
           P HR S  W G GR WRW
Sbjct: 111 PPHR-SAGWVGDGREWRW 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,493,754
Number of Sequences: 37544
Number of extensions: 130271
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)