Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C23
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_39700| Best HMM Match : MBT (HMM E-Value=6.6)                       37   0.007
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_59449| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_14574| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_48628| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 29   2.0  
SB_37659| Best HMM Match : Motilin_ghrelin (HMM E-Value=3.2)           28   3.5  
SB_55652| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_55701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 25/57 (43%), Positives = 32/57 (56%)
 Frame = -1

Query: 342 RILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHRCP 172
           RI+ D +RI   R +ILP H RI   R +ILPD  QI   H +I+PD  + L    P
Sbjct: 49  RIIPDHSRIIPDRSRILPDHSRIIPDRSRILPDHSQIIPDHSRIVPDRSRILPIHSP 105



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
 Frame = -1

Query: 342 RILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNL-DHR--CP 172
           RIL D +RI   R +ILP + RI     +I+PD  +I   H +I+PD  + L DH    P
Sbjct: 28  RILPDLSRIIPDRSRILPDNSRIIPDHSRIIPDRSRILPDHSRIIPDRSRILPDHSQIIP 87

Query: 171 GHRVLV*NLGCYLQIH-PGLVH 109
            H  +V +    L IH P  VH
Sbjct: 88  DHSRIVPDRSRILPIHSPYQVH 109



 Score = 30.3 bits (65), Expect = 0.86
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 318 IPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNL-DH 181
           +PD+  +ILP   RI   R +ILPD  +I   H +I+PD  + L DH
Sbjct: 23  LPDHS-RILPDLSRIIPDRSRILPDNSRIIPDHSRIIPDRSRILPDH 68



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 321 RIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNL-DH 181
           RI     +ILPG  +I     +ILPDL +I     +ILPD  + + DH
Sbjct: 7   RIATSIFRILPGLSQILPDHSRILPDLSRIIPDRSRILPDNSRIIPDH 54


>SB_39700| Best HMM Match : MBT (HMM E-Value=6.6)
          Length = 426

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 339 ILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHRCP 172
           +L+D AR+PD    +L    R+PD R  +L D  ++PD    +L D    +  +CP
Sbjct: 13  LLMDSARVPDQCPILLMNSARVPDQRPILLMDSARVPDQCTILLMD-SARVPDQCP 67



 Score = 33.9 bits (74), Expect = 0.070
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 360 DLGYRLRILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDH 181
           D   RL +L++ AR+PD    +L    R+PD    +L D  ++P Y   IL      +  
Sbjct: 86  DSARRLILLMNSARVPDQCPILLMDSARVPDQCTILLMDSARVP-YQCPILLMDSARVPD 144

Query: 180 RCP 172
           +CP
Sbjct: 145 QCP 147



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 339 ILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNL 187
           +L+D AR+PD    +L    R+PD    +L D  ++PD    +L D  + L
Sbjct: 41  LLMDSARVPDQCTILLMDSARVPDQCPILLMDSARVPDQCPILLMDSARRL 91



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -1

Query: 333 LDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPD----PDQ 193
           +D AR+PD    +L    R+PD    +L +  ++PD    +L D    PDQ
Sbjct: 1   MDSARVPDQAAILLMDSARVPDQCPILLMNSARVPDQRPILLMDSARVPDQ 51


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +1

Query: 112 DKARVDLEVTAKVLDQNTVTR--APVIKXXXXXXXXXXXXXXXLDKVREDLVAVIRDTDM 285
           D  RV+ +    + D   V R    V++                 +V +D   V+RD   
Sbjct: 149 DAGRVESDAGRVMQDAGRVVRDAGRVVRDAGRVVRDAGRVVSDAGRVMQDAGRVVRDAGR 208

Query: 286 AREDLEAVIRDSGRVK 333
             +D   V+RD+GRVK
Sbjct: 209 VMQDAGRVVRDAGRVK 224



 Score = 30.3 bits (65), Expect = 0.86
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 241 KVREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTV 351
           +V  D   V+RD      D   V+RD+GRV +D+  V
Sbjct: 29  RVVRDAGRVVRDAGRVESDAGRVVRDAGRVMQDAGRV 65



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 241 KVREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTV 351
           +V +D   V+RD      D   V+RD+GRV  D+  V
Sbjct: 159 RVMQDAGRVVRDAGRVVRDAGRVVRDAGRVVSDAGRV 195



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 253 DLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVTK 357
           D   V+RD      D   V+RD+GRV+ D+  V +
Sbjct: 19  DAERVVRDAGRVVRDAGRVVRDAGRVESDAGRVVR 53



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 KVREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVTK 357
           +V  D   V+ D     +D   V+RD+GRV +D+  V +
Sbjct: 180 RVVRDAGRVVSDAGRVMQDAGRVVRDAGRVMQDAGRVVR 218



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = +1

Query: 112 DKARVDLEVTAKVLDQNTVTR--APVIKXXXXXXXXXXXXXXXLDKVREDLVAVIRDTDM 285
           D  RV+ +    + D   V R    V++                 +V +D   V  D   
Sbjct: 100 DAGRVESDAGRVMQDAGRVVRDAGRVVRDAGRVSRDAGRVVSDAGRVMQDAGRVESDAGR 159

Query: 286 AREDLEAVIRDSGRVKEDSKTVTK 357
             +D   V+RD+GRV  D+  V +
Sbjct: 160 VMQDAGRVVRDAGRVVRDAGRVVR 183



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 244 VREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVTK 357
           V  D   V+RD      D   V++D+GRV  D+  V +
Sbjct: 90  VSRDAGRVVRDAGRVESDAGRVMQDAGRVVRDAGRVVR 127



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 241 KVREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVTK 357
           +V  D   V+RD      D   V+ D+GRV +D+  V +
Sbjct: 166 RVVRDAGRVVRDAGRVVRDAGRVVSDAGRVMQDAGRVVR 204



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 241 KVREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTV 351
           +V  D   V+RD     +D   V  D+GRV +D+  V
Sbjct: 43  RVESDAGRVVRDAGRVMQDAGRVESDAGRVMQDAGRV 79


>SB_59449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 363 PDLGYRLRILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPD 202
           P    RL + +D AR+PD    +L    R+PD    +L D   +PD    +L D
Sbjct: 186 PSQHQRLILPMDSARVPDQCPILLMDSARVPDQCPILLMDSATVPDQFPILLMD 239


>SB_14574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 363 PDLGYRLRILLDPARIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPD 202
           P    RL + +D AR+PD    +L    R+PD    +L D   +PD    +L D
Sbjct: 63  PSQHQRLILPMDSARVPDQCPILLMDSARVPDQCPILLMDSATVPDQFPILLMD 116


>SB_48628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
 Frame = -1

Query: 342 RILLDPARI-PDYRLQILPGHVRI-PDYRHQILPDLVQ-IPDYHLQILPD 202
           R+L D  R+ PD R Q+LP   R+ PD R Q+LPD+ + +PD   +++PD
Sbjct: 343 RVLSDVRRVLPDVR-QVLPDVRRVLPDVR-QVLPDVRRVVPDVR-RVVPD 389



 Score = 30.3 bits (65), Expect = 0.86
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
 Frame = -1

Query: 342 RILLDPARI-PDYRLQILPGHVRI-PDYRHQILPDLVQIPDYHLQILPD 202
           R+L D  ++ PD R +++P   R+ PD R ++LPD+ Q+    LQ+LPD
Sbjct: 364 RVLPDVRQVLPDVR-RVVPDVRRVVPDVR-RVLPDVRQVLPDVLQVLPD 410



 Score = 30.3 bits (65), Expect = 0.86
 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
 Frame = -1

Query: 342 RILLDPARI-PDYRLQILPGHVRI-PDYRHQILPDLVQI-PDYHLQILPD 202
           ++L D  R+ PD R +++P   R+ PD R Q+LPD++Q+ PD   ++LPD
Sbjct: 371 QVLPDVRRVVPDVR-RVVPDVRRVLPDVR-QVLPDVLQVLPDVR-RVLPD 417


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 291 PGHVRIPDYRHQILPDLVQ--IPDYHLQILPDPDQNLDHRCPGHRVL 157
           P HV I  + HQ+ P      I  +H Q+ P P   +   C  H+V+
Sbjct: 207 PSHVIIKSHHHQVTPSSSHTIIKSHHHQVAPSPSHVIIKSC-HHQVM 252


>SB_37659| Best HMM Match : Motilin_ghrelin (HMM E-Value=3.2)
          Length = 468

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 253 DLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVT 354
           D VA   +T  ARE+ EAV+  +  +KEDS   T
Sbjct: 271 DSVASAPETLAAREEGEAVVESNSSLKEDSVDAT 304


>SB_55652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 357 LGYRLRILLDPARIPDYRLQILPG 286
           LGYR+R + DP  I      ILPG
Sbjct: 85  LGYRIRTIKDPKEIASVDKLILPG 108


>SB_55701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 330 DPA-RIPDYRLQILPGHVRIPDYRHQILPDLVQIPDYHLQILPDP 199
           DP+ RIPD  + IL   V IPD   +I    V IPD  + IL DP
Sbjct: 4   DPSVRIPDPSVWILYPSVWIPDTSVRIPDPRVWIPDPSMWIL-DP 47


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 235 LDKVREDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVTK 357
           ++ V EDL  V    +   EDL+ V      V ED K VT+
Sbjct: 248 VEPVTEDLKPVTEPVEPVTEDLKPVTEPDEPVTEDVKPVTE 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,631,493
Number of Sequences: 59808
Number of extensions: 145928
Number of successful extensions: 543
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)