Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C23
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56980.1 68418.m07112 expressed protein non-consensus CG dono...    29   1.6  
At5g37530.1 68418.m04520 thiF family protein similar to SP|P3013...    27   6.5  

>At5g56980.1 68418.m07112 expressed protein non-consensus CG donor
           splice site at exon 1, GA donor splice site at exon 3
          Length = 379

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -1

Query: 288 GHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHRCPGHRVLV*NLGCYLQIHPGLVH 109
           GH   P  R   + D V+  ++HL   P P+  L      H ++  +L  Y   +P  + 
Sbjct: 50  GHAPAPLARAPSIIDRVKSINFHLYKFPHPETELFSMTAHHDIIGSDLHVYPDPNPAPLQ 109

Query: 108 RSQNLRNEV 82
           R+ +L + V
Sbjct: 110 RAPSLLDRV 118


>At5g37530.1 68418.m04520 thiF family protein similar to SP|P30138
           Adenylyltransferase thiF (EC 2.7.7.-) {Escherichia
           coli}; contains Pfam profile PF00899: ThiF family
          Length = 457

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 333 LDPARIPDYRLQILPGHVRIPDYRHQILPDLV--QIPDYHLQILPDPDQNLDHRCPGHRV 160
           LD   +P +R++I+P    IP    QI+   V  Q+    +Q+ P  + +LDH    H+ 
Sbjct: 285 LDYQVVPGFRVRIIPVLGTIPAIFGQIMASYVITQLAGVQVQMEPIVNLDLDHYRLLHQR 344

Query: 159 LV 154
           L+
Sbjct: 345 LI 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,072,118
Number of Sequences: 28952
Number of extensions: 98024
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)