Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C22
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   118   7e-28
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   118   7e-28
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   0.78 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.2  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  118 bits (283), Expect = 7e-28
 Identities = 60/103 (58%), Positives = 70/103 (67%)
 Frame = +2

Query: 23  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 202
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 203 FPMKQGVLTNSRVRLLMSKATLLATDHVVTVRGKRKSVRGCIV 331
           FPM QGVL   RVRLL+              R KRKSVRGCIV
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGER-KRKSVRGCIV 102



 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 36/59 (61%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
 Frame = +3

Query: 369 SLSRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKR-LLPAKEGRK 542
           ++ ++G Q+IPGLTD  VP+RLGPKRASKIR+ F L KEDDVR++V++R ++P KEG+K
Sbjct: 112 AIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  118 bits (283), Expect = 7e-28
 Identities = 60/103 (58%), Positives = 70/103 (67%)
 Frame = +2

Query: 23  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 202
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 203 FPMKQGVLTNSRVRLLMSKATLLATDHVVTVRGKRKSVRGCIV 331
           FPM QGVL   RVRLL+              R KRKSVRGCIV
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGER-KRKSVRGCIV 102



 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 36/59 (61%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
 Frame = +3

Query: 369 SLSRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKR-LLPAKEGRK 542
           ++ ++G Q+IPGLTD  VP+RLGPKRASKIR+ F L KEDDVR++V++R ++P KEG+K
Sbjct: 112 AIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 427 RGTSPSVSPGISCAPLRDND-QRGA*GD*KVSINNAT 320
           + T+   S   S  PLRD + QRG  GD K +INN+T
Sbjct: 509 QSTNAEPSNNQSNPPLRDQEPQRGDKGDIKSAINNST 545


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 235 PCTSLDVKGHSSCYRPRRDGERKTQ 309
           P +S   K HS+  +P R+ E+KTQ
Sbjct: 37  PRSSAKTKEHSADRKPHRNSEKKTQ 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,855
Number of Sequences: 5004
Number of extensions: 41744
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)