Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C22
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 120 6e-28
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 4e-27
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 31 0.79
02_01_0295 - 1973115-1973404,1974138-1974663 30 1.0
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 29 3.2
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 28 4.2
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 27 7.4
11_01_0404 + 3071412-3071464,3073572-3074970 27 9.8
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 27 9.8
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 120 bits (290), Expect = 6e-28
Identities = 58/104 (55%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 202
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 203 FPMKQGVLTNSRVRLLMSKATLLATDH-VVTVRGKRKSVRGCIV 331
FPMKQGVLT+ RVRLL+ + T + +RKSVRGCIV
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIV 104
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +3
Query: 378 RKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYV--VKRLLPAKEGRKM 545
+KG ++PGLTD E PR GPKRASKIRKLF L K+DDVR+YV +R K G+K+
Sbjct: 117 KKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKV 174
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (283), Expect = 4e-27
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 202
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 203 FPMKQGVLTNSRVRLLMSKATLLATDH-VVTVRGKRKSVRGCIV 331
FPMKQGVLT RVRLL+ + T + +RKSVRGCIV
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIV 104
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +3
Query: 378 RKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYV--VKRLLPAKEGRKM 545
+KG ++PGLTD E PR GPKRASKIRKLF L K+DDVR+YV +R K G+K+
Sbjct: 117 KKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKV 174
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 30.7 bits (66), Expect = 0.79
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 375 TMTKGGLKGTERLASTMQPRTDLRFPLTVTTWSVARRVAFDIK 247
T GG G E +A+ ++ TDL F +TT ++++++A + K
Sbjct: 112 TSRNGGQAGEEEVAAMLEEATDLVFAQAITTDTLSKKLAANDK 154
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 369 SLSRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKRLLPAKEG 536
+L GA PG ++P R+G + +KIRKL +K ++D++ ++K +P K G
Sbjct: 197 ALGSIGAGTTPGRVYKGKKMPGRMGGTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 112 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 5
LF++ T V + F L RC V + +LH C Q+L
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 432 DGGELHRQSVQEFPVHLCGTMTKGGLKGTERLASTMQPRTD 310
+GGELH ++E P + T KG +E L + PR +
Sbjct: 25 EGGELHHHQIKEPPPEVEQTGGKGWAAMSEALIGSRPPRCE 65
>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
Length = 404
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 405 LTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKRLLPA 527
+ D E P+ + + + K+ L ED +VVKRLL A
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRA 205
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 179 AGGNDKQGFPMKQGVLTNSRVRLLMSKATLLATDHVVTVRGKRKS 313
A G DK+G P + T+S V+LL++ + D + G R++
Sbjct: 148 ADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRN 192
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 360 PLWSLSRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVR 497
PLW+L ++ PG + P L P R+ R L +ED++R
Sbjct: 250 PLWTLEVLDGEQAPGRVFEDFPHHLQPPRSVHDR-LGDHDREDELR 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,502
Number of Sequences: 37544
Number of extensions: 318653
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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