Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C22
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)               97   8e-21
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   36   0.022
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 29   2.5  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   2.5  
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)              27   7.6  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 46/71 (64%), Positives = 52/71 (73%)
 Frame = +2

Query: 125 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKATLLATDHVVTVRGK 304
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SK            R K
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGER-K 60

Query: 305 RKSVRGCIVDA 337
           RKSVRGCIVD+
Sbjct: 61  RKSVRGCIVDS 71



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/55 (69%), Positives = 46/55 (83%)
 Frame = +3

Query: 378 RKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKRLLPAKEGRK 542
           +KG Q+IPGLTD  +PRRLGPKR  KIRK+F L KEDDVR+YV++R LP KEG+K
Sbjct: 82  KKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGKK 136


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 250 QETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 101
           QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 411  DGEVPRRLGPKRAS-------KIRKLFTLKKEDDVRRYVVKRLLPAKEGRKM 545
            D ++PRR+  +R +       K RK+F+L     +   + KRLLP   GR +
Sbjct: 1206 DKDIPRRIKQERQNNRYTDHRKFRKVFSLPSRLKIPANLAKRLLPPPPGRNV 1257


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 414 GEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVK 512
           G    + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
          Length = 533

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 253 VKGHSSC---YRPRRDGERKTQVC 315
           VKG SSC   Y PR  GER T +C
Sbjct: 69  VKGKSSCKSHYCPRHKGERLTLLC 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,771
Number of Sequences: 59808
Number of extensions: 359917
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)