Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C22
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 124 3e-29
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 123 7e-29
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 31 0.50
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 30 1.2
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ... 29 2.0
At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) simi... 28 3.5
At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) simi... 28 3.5
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 4.7
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 27 6.2
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 27 6.2
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 6.2
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 8.2
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 8.2
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 124 bits (300), Expect = 3e-29
Identities = 61/104 (58%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 202
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 203 FPMKQGVLTNSRVRLLMSKATLLATDH-VVTVRGKRKSVRGCIV 331
FPMKQGVLT RVRLL+ + T H T +RKSVRGCIV
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIV 104
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
Frame = +3
Query: 378 RKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYV--VKRLLPAKEGRKM 545
+KG ++PGLTD E PR GPKRASKIRKLF LKKEDDVR YV +R K+G+++
Sbjct: 117 KKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEV 174
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 123 bits (297), Expect = 7e-29
Identities = 60/104 (57%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 202
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 203 FPMKQGVLTNSRVRLLMSKATLLATDH-VVTVRGKRKSVRGCIV 331
FPMKQGVLT RVRLL+ + T H T +RKSVRGCIV
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIV 104
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
Frame = +3
Query: 378 RKGAQEIPGLTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYV--VKRLLPAKEGRKM 545
+KG ++PGLTD E PR GPKRASKIRKLF L KEDDVR+YV +R K+G+K+
Sbjct: 117 KKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKV 174
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 405 LTDGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKRLLPAKE 533
+ +G V ++ ++A + K +KKEDDVR+ +KRL K+
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKK 330
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 369 SLSRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFTLKKEDDVRRYVVKRLLPAKEG 536
+L GA PG ++P R+G R +KIRKL +K + ++ ++K LP K G
Sbjct: 197 ALGSIGAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIVKVDKELNVVMIKGALPGKPG 253
>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 641
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 441 KRASKIRKLF--TLKKEDDVRRYVVKRLLP 524
KR + I KL TL++ +D+R Y+V LLP
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLP 608
>At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) similar
to ethylene receptor GB:AAC31123 [Malus domestica],
identical to putative ethylene receptor GB:AAD02485
[Arabidopsis thaliana]; Pfam HMM hit: response regulator
receiver domain, signal C terminal domain
Length = 766
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 414 GEVPRRLGPKRASKIRKL-FTLKKEDDVRRYVVKRLL 521
G P P S +R L TL +DDV R V KRLL
Sbjct: 625 GNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLL 661
>At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) similar
to ethylene receptor GB:AAC31123 [Malus domestica],
identical to putative ethylene receptor GB:AAD02485
[Arabidopsis thaliana]; Pfam HMM hit: response regulator
receiver domain, signal C terminal domain
Length = 766
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 414 GEVPRRLGPKRASKIRKL-FTLKKEDDVRRYVVKRLL 521
G P P S +R L TL +DDV R V KRLL
Sbjct: 625 GNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLL 661
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 393 EIPGLTDGEVPRRLGPKRASKIRKLFTLKKE 485
E+PGL D V L PK+ ++++KL K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 453 KIRKLFTLKKEDDVRRYVVKRLLP 524
+I K TLK++ D++ Y+V++LLP
Sbjct: 504 EILKAKTLKEKKDMKSYIVQQLLP 527
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 62 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 241
K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654
Query: 242 RLLMSKATLLA 274
+ S L A
Sbjct: 655 MEIDSGKNLYA 665
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 59 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 154
+KL+ EV DE KLR+ YE++ D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.1 bits (57), Expect = 8.2
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -1
Query: 188 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 15
Y+ G H R+L+DL Q R AC H P ++S I L R+T LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 44 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 211
P CQ + V D + FYEK G E+ E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,817
Number of Sequences: 28952
Number of extensions: 236454
Number of successful extensions: 553
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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