Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C21
         (127 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1DDC7 Cluster: PREDICTED: hypothetical protein;...    33   1.2  
UniRef50_Q9KQW8 Cluster: Rec2-related protein; n=18; Vibrio chol...    33   1.6  

>UniRef50_UPI0000F1DDC7 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 735

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 124 HYCRPMEHHYCPPRELCLRQP 62
           H CR + HHY  PR  CLR P
Sbjct: 324 HNCRSVGHHYATPRRSCLRCP 344


>UniRef50_Q9KQW8 Cluster: Rec2-related protein; n=18; Vibrio
           cholerae|Rep: Rec2-related protein - Vibrio cholerae
          Length = 752

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 44  SSPYWPWLPQTEFTWWTIVV 103
           S+PYWPW+P   + W  ++V
Sbjct: 24  SAPYWPWMPSWGWAWLCLIV 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,526,339
Number of Sequences: 1657284
Number of extensions: 1385762
Number of successful extensions: 5008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5006
length of database: 575,637,011
effective HSP length: 22
effective length of database: 539,176,763
effective search space used: 10244358497
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)