Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C21
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   1.8  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    22   9.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    22   9.7  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    22   9.7  

>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 118 CRPMEHHYCPPRELCLRQP 62
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 102 TTIVHHVNSVCGSHGQYGEEEKHESFHCR 16
           T+I  +      +  +YG E KH S H R
Sbjct: 22  TSITIYPQCFISTGKEYGSEPKHISVHVR 50


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 91   PPRELCLRQPWP 56
            PPRE     PWP
Sbjct: 1933 PPRERAFDNPWP 1944


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18  DNESFRVFLLRRIGHGCRKQ 77
           +N S  V +LR+ GH C K+
Sbjct: 86  NNLSHSVHVLRKEGHKCSKE 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,539
Number of Sequences: 5004
Number of extensions: 5568
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)