Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C21
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   0.30 
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    26   3.7  
12_02_0219 + 15822050-15824896                                         26   4.9  
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815...    25   6.5  
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    25   8.6  

>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 124 HYCRPMEHHYCPPRELCLRQPW 59
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 120 IAVRWNTTIVHHVNSV 73
           IA RW T ++HHVNS+
Sbjct: 507 IAGRWLTQMLHHVNSL 522


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 8   DTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 103
           D +R+ ++ C F+  P WPWL     ++ T+V+
Sbjct: 272 DPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303


>02_05_0996 -
           33380363-33380597,33380767-33380851,33381206-33381557,
           33381690-33382340
          Length = 440

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 123 TIAVRWNTTIVHH----VNSVCGSHGQYGEEEKHESFHCRIVSE 4
           T+A+R N   +HH    V++ C   GQY E+  H  F C+ V +
Sbjct: 177 TLALRAN---LHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPVKK 217


>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 8   DTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 103
           D  R+ ++ C F   P WPWL  T  ++ T+V+
Sbjct: 369 DPSRKHEMHCRFEKKPPWPWLAITS-SFGTLVI 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,679,780
Number of Sequences: 37544
Number of extensions: 42928
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)