Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C21
         (127 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   1.3  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   1.7  
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam...    25   7.0  
At5g54880.1 68418.m06836 DTW domain-containing protein contains ...    25   9.3  

>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 5   SDTIRQ*KLSCFSSSPYWPWLP 70
           S  I + + SC  SSP+ PW+P
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVP 117


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 111 RWNTTIVHHVNSVCGSHGQYGEEEKH 34
           +W   I HH     G HG   E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264


>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
           protein similar to peroxisomal-coenzyme A synthetase
           (FAT2) [gi:586339] from Saccharomyces cerevisiae;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA; identical to cDNA adenosine
           monophosphate binding protein 3 AMPBP3
           (AMPBP3)GI:20799714
          Length = 514

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 38  FSSSPYWPWLPQTEFTWWTIV 100
           FS++ +WP + +   TW+T V
Sbjct: 240 FSATTFWPDMKKYNATWYTAV 260


>At5g54880.1 68418.m06836 DTW domain-containing protein contains
           Pfam domain, PF03942: DTW domain
          Length = 394

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 9   TLFDNESFRVFLLRRIGHGCRK 74
           T+FD      FL+R IG GC K
Sbjct: 104 TVFDVHDEAEFLIRVIGSGCSK 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,727
Number of Sequences: 28952
Number of extensions: 32679
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 22
effective length of database: 11,433,616
effective search space used: 217238704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)