Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C20
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    29   0.64 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   1.5  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    25   6.0  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   6.0  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.9  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   7.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.9  

>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 158 RVSWRIYPLWEKNRVYIKIL 217
           R SW  YPLW + ++Y K+L
Sbjct: 308 RKSWETYPLWVQVKLYEKVL 327


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 119 RASFGDGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQY 238
           +AS  +G   +  R+  R+Y LW+KN   I+ +  H+N++
Sbjct: 91  QASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEF 130


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 476 RNVQDCRRLHYVPTVVYRHHCRRA-FQVSKVYCTVCCRYKIAFPSQ 342
           R+ ++C R H    V Y+ H RR    ++ +Y  V C +  AF  Q
Sbjct: 70  RSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF--AFEEQ 113


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 359 IAFPSQVKPDVNTIDVYKYRLHQLQTLYDHRL 264
           I FPS  K  VNT++VYK  L +    Y+ RL
Sbjct: 22  ILFPSIPKALVNTLNVYK--LEERLNYYNDRL 51


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 47  PVLIINKRDELALKLQLSMD 106
           PV+++NK D   L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 293 DADDTYRHQWYLHPVLLEKETLFYIYNRRYNKPLKL 400
           D+ D Y+  WY  P LL          + Y KPL+L
Sbjct: 374 DSSDLYK--WYKGPTLLSALDQLVPPEKPYRKPLRL 407


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 47  PVLIINKRDELALKLQLSMD 106
           PV+++NK D   L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,860
Number of Sequences: 5004
Number of extensions: 49006
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)