Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C20
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    31   0.66 
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    29   3.5  
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397...    28   4.6  
12_02_0503 - 19756561-19757991,19758606-19759967                       28   6.1  
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304...    27   8.1  

>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 188 EKNRVYIKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYRHQW 322
           + +R YI IL  HRN+ LK+E+      D    G     +++  W
Sbjct: 61  DNSRHYIVILGSHRNKRLKIEVDGKTVVDVAGIGLCCSSSFQSYW 105


>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 121 PVSVIVHTQLKLKSQFISLVNN 56
           P  +IVH + K++SQF  ++NN
Sbjct: 93  PTEMIVHLRFKIRSQFCMILNN 114


>05_06_0202 -
           26339467-26339494,26339579-26339624,26339742-26339785,
           26340729-26340851,26341010-26341124,26341447-26342207,
           26342305-26342711,26342798-26342900,26344642-26345144
          Length = 709

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +2

Query: 251 IKSDVDGDHKAFGADADDTYRHQWYLHPVLLEKETLFYIYNRRYNKPLKLGRHVDSDGDR 430
           +K + +G+  A  A+ ++  +      P  +     FY+++ R+ +    GR     GDR
Sbjct: 118 MKGEAEGEASAAAAEGEEGKKGS---EPYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDR 174

Query: 431 QLW 439
           +LW
Sbjct: 175 RLW 177


>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 488 QCAIRNVQDCRRLHYVPTVVYRHHCRRAFQVSKVYCTVCCRYKIAFP 348
           Q +I NV+ C  L  +   +   HCR    V  V   VCC   I+ P
Sbjct: 694 QLSILNVESCNLLVSLNGFLQEEHCR----VLTVLSLVCCHMLISLP 736


>03_05_0006 +
           19527479-19528769,19529693-19530105,19530220-19530430,
           19530531-19530768,19530847-19530997,19531240-19531542
          Length = 868

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 107 NDGDRASFGDGADKTSHRVSWRIYPLWEKNRV 202
           N+G    FG      S   +W I P W++N V
Sbjct: 481 NNGQVTPFGQRNHTASALNNWEITPFWQRNHV 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,842
Number of Sequences: 37544
Number of extensions: 311977
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)