Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C20
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   35   0.041
SB_52192| Best HMM Match : Fibrinogen_C (HMM E-Value=0.077)            30   1.2  
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               30   1.2  
SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9)                  28   6.3  

>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 24/99 (24%), Positives = 39/99 (39%)
 Frame = +2

Query: 26  RMFLNEDPVLIINKRDELALKLQLSMDNDGDRASFGDGADKTSHRVSWRIYPLWEKNRVY 205
           R+F   D     ++ D++AL L +   N   R+   D         S   +P W  N  +
Sbjct: 178 RLFWEGDQKARESESDDMALDLFVRQGNTTWRSGKSDNCQNNRPTSSRSYFPKWRSNNEF 237

Query: 206 IKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYRHQW 322
              LN + N+Y K  + +    D   + +D   T  H W
Sbjct: 238 QDFLNSNANRYDKFLVVNRFHSDMCRYHSDL--TRHHFW 274


>SB_52192| Best HMM Match : Fibrinogen_C (HMM E-Value=0.077)
          Length = 723

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 293 DADDTYRHQWYLHPVLLEKETLFYIYNRRYNKPLKLGRHVDSDGDRQLWGHNG 451
           D D +Y H  + HP  +  E +F +Y+ R   P   G   + DG    W   G
Sbjct: 670 DTDYSYAHCRFKHPNYVTYENIFGLYSDRERNPKFRGS--EDDGSTTQWWFGG 720


>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 1108

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -2

Query: 539 RIVILHFNLLQNFTEMVQCAIRNVQDCRRLHYVPTVVYRHHCRRAFQVSKVYCT-VCCRY 363
           R+  +   L   F  +    +  V D + +H  P + YR H +       V C     + 
Sbjct: 251 RVKSVEEGLKDGFPVVTWMPVECVPDDKHVHD-PVMHYRIHLKSVIPEIGVPCPKYMSKE 309

Query: 362 KIAFPSQVKPDVNTIDVYKYRLHQLQTLY 276
             +FP  VKPD ++  +Y  + +  + LY
Sbjct: 310 SASFPCFVKPDQSSTGLYHQKAYNQEELY 338


>SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 146 KTSHRVSWRIYPLWEKNRVYIKILNIHRNQYLKLEI 253
           K SH   +R   +WE ++ Y+K +NI   ++ KLE+
Sbjct: 57  KLSHSTMFRKLFVWETSKTYLKDINI---RHFKLEV 89


>SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9)
          Length = 564

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 332 PVLLEKETLFYIYNRRYNKPLKLGRHVDSDGDRQLWGHNGVADNPEHFGWHI 487
           P  LEK  +       Y KPL+   +      R  WG + +A+  ++ GWHI
Sbjct: 217 PEPLEKHLMPRGLQWNYTKPLECRENETQGIRRHYWGTHKLAEKQKN-GWHI 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,717,558
Number of Sequences: 59808
Number of extensions: 371265
Number of successful extensions: 1219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)