Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C20
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81482-4|CAB03958.1|  104|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   3.1  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    27   9.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +2

Query: 134 DGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYR 313
           D   K   +   ++YPL E   VYI+ + I +   + L    D+ GD    GAD +   R
Sbjct: 189 DSIGKDIEKTCSKLYPLQE---VYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDR 245

Query: 314 HQWYLHPVLLE 346
              Y  PV  E
Sbjct: 246 PDDYEPPVQQE 256


>AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical
           protein R52.3 protein.
          Length = 379

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 410 VDSDGDRQLWGHNGVADNPEHFGWHI 487
           V  +G  +L+G   V DNP  +GWHI
Sbjct: 291 VSPNGRSELFGGTYVFDNPNIYGWHI 316


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 260 DVDGDHKAFGADADDTYRHQWYLHPVLLEKETLFYIYN 373
           D  G+H+ FG DA   Y +Q+YL+   +E +  F + N
Sbjct: 82  DFPGNHQYFGIDASVPYNNQFYLNRD-MESDKFFLLKN 118


>Z81482-4|CAB03958.1|  104|Caenorhabditis elegans Hypothetical
           protein C40H5.7 protein.
          Length = 104

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 548 FLNRIVILHFNLLQNFTEMVQCAIRNVQDC 459
           FL  ++I H +   NF E+++C ++ +QDC
Sbjct: 75  FLKFLIISH-HFQNNFQEVLKCFLKRIQDC 103


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +2

Query: 83  LKLQLSMDNDGDRASFGDGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQ-----YLKL 247
           LK Q+   +D  R     G DK  +       P+ + +    K+LNI  N+     Y+KL
Sbjct: 2   LKRQIEFTSDSIRFRCPGGGDKEYYYTQMMYKPIADNSHTGAKLLNIELNKQCEESYIKL 61

Query: 248 EIKS 259
           E  S
Sbjct: 62  EFTS 65


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +2

Query: 224  HRNQYLKLEIKSDVDGDHKAFGADADDTYRHQWYLHPVLLEKETLFYI 367
            HR     L      D  H   G D    + H WYL  + + + T  YI
Sbjct: 1110 HRGSVSSLITDKPRDRVHDEKGVDQSGRHFHSWYLGTISINQVTPSYI 1157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,620
Number of Sequences: 27780
Number of extensions: 278383
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)