Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C20
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41700.1 68415.m05151 ABC transporter family protein similar ...    29   1.7  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    29   2.2  
At2g31570.1 68415.m03857 glutathione peroxidase, putative              28   3.9  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    28   3.9  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    28   3.9  
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    27   9.0  
At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related...    27   9.0  
At3g50300.1 68416.m05501 transferase family protein similar to a...    27   9.0  
At3g13020.1 68416.m01622 hAT dimerisation domain-containing prot...    27   9.0  

>At2g41700.1 68415.m05151 ABC transporter family protein similar to
            ATP-binding cassette transporter ABCA1 GI:18031705 from
            [Arabidopsis thaliana]
          Length = 1822

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 514  YCKILLKWC-NVPSEMFRIVGDSIMSPQLSIAITVDVPSKFQRFIVPSVVDIK*RFL 347
            +C+I+ +W  NVP++   ++GD  +   +S +IT D  S  +  + P +V    +FL
Sbjct: 1643 FCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFL 1699


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 389 VYCTVCCRYKIAFPSQVKPDVNTIDVYKYRLHQLQTLYDHRLHRT*SL 246
           +YC V C Y +      KP V +ID  K+  H L  L+  R   T +L
Sbjct: 248 IYCCVSCDYAMNMACAKKPPVLSIDHPKWHEHTL-VLFPRRAFLTCNL 294


>At2g31570.1 68415.m03857 glutathione peroxidase, putative
          Length = 169

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 380 TVCCRYKIAFPSQVKPDV---NTIDVYKY 303
           TVC R+K  FP   K DV   NT  +YKY
Sbjct: 87  TVCTRFKAEFPIFDKVDVNGKNTAPLYKY 115


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 330 IRFYLRRKRYFISTTDGTINL*NLEGTSTVMAIDNCGDIMESPTILNISDGTL 488
           ++F   + RY  +  D +I   +++    + AID  G +  SP I    +G+L
Sbjct: 603 VQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSL 655


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 330 IRFYLRRKRYFISTTDGTINL*NLEGTSTVMAIDNCGDIMESPTILNISDGTL 488
           ++F   + RY  +  D +I   +++    + AID  G +  SP I    +G+L
Sbjct: 603 VQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSL 655


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 416 CRRAFQVSKVYCTVCCRYKIAFPSQVKPDVNTIDVYKYRLHQLQTLY 276
           C+R    +++ C+  C Y I +     P       YKY  H L   Y
Sbjct: 455 CKRGLTKNRLQCSTLCEYSICYECATIPSELH---YKYDKHPLTLCY 498


>At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related
           similar to storekeeper protein GI:14268476 [Solanum
           tuberosum]
          Length = 328

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 110 DGDRASFGDGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQYLKLEIKSDV 265
           DG     G G D+ + + +W + P+ ++ R+  K+ ++  ++      K DV
Sbjct: 265 DGAFKELGPGVDEETWKKNWSLVPVKKRKRIEEKVKSMQADELKTTWQKIDV 316


>At3g50300.1 68416.m05501 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 14  PKEFRMFLNEDPVLIINKRDELALKLQLSMDNDGDRASFGDGADKTSHRVSWRIYPLWEK 193
           P  FR+F   + V  I+   E  L LQ++   DG   SFG           W    +W K
Sbjct: 123 PDFFRLFFPMNGVRSIDGLSEPLLALQVTEIKDGIVISFGYNHLVADGSSMWNFIHVWSK 182


>At3g13020.1 68416.m01622 hAT dimerisation domain-containing protein
           contains Pfam profile: PF04937 domain of unknown
           function (DUF659), weak hit to PF05699: hAT family
           dimerisation domain
          Length = 605

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 199 SILLP*WVNPPAHPVASFVRTIAE*GPV---SVIVHTQLKLKSQFISLVN 59
           SILL  W++P  H + SFV      GPV   S+ V       +  +SLVN
Sbjct: 195 SILLDAWIDPKGHDLVSFVADCPA-GPVYLKSIDVSVVKNDVTALLSLVN 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,999
Number of Sequences: 28952
Number of extensions: 255178
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)