Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C19
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 92 4e-20
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 91 8e-20
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 87 2e-18
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.47
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 2.5
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 4.4
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 7.7
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 25 7.7
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 91.9 bits (218), Expect = 4e-20
Identities = 46/102 (45%), Positives = 60/102 (58%)
Frame = +1
Query: 91 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 270
SK+ PES+ ++++A KKR+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 271 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 396
+I L R+AR GNYYVP E KL FVIRIRG+N + PK RK++
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIM 111
Score = 37.9 bits (84), Expect = 8e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +2
Query: 377 PRYARYCQLFRLRQINNGVFVRLNKAT 457
P+ + QL RL QINNGVFV+ NKAT
Sbjct: 105 PKARKIMQLLRLIQINNGVFVKFNKAT 131
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 91.1 bits (216), Expect = 8e-20
Identities = 44/95 (46%), Positives = 58/95 (61%)
Frame = +1
Query: 112 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 291
PES+ +++SA KKR+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 292 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 396
AR GNY+VP E KL FV+RIRG+N + PK RK++
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIM 110
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 377 PRYARYCQLFRLRQINNGVFVRLNKA 454
P+ + QL RL QINNG+FV+ NKA
Sbjct: 104 PKARKIMQLLRLLQINNGIFVKFNKA 129
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 86.6 bits (205), Expect = 2e-18
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = +1
Query: 178 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 357
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96
Query: 358 GVNQVSPKVRKVL 396
GV + PK+RKVL
Sbjct: 97 GVKNMPPKIRKVL 109
Score = 31.9 bits (69), Expect = 0.051
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 377 PRYARYCQLFRLRQINNGVFVRLNKATVK 463
P+ + +L RL +INN VFVR NKA +
Sbjct: 103 PKIRKVLRLLRLSRINNAVFVRNNKAVAQ 131
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.47
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 196 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 309
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 226 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 327
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 187 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 300
R S K ++E +R +QYV E E+D+I + + ++
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 181 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 309
KR A ++ K+ +R ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 470 KHVSLWPC*DERTRRC*SDAA*TAGNTLRTLGDTW 366
KH WP +E TR+ + N L T +TW
Sbjct: 223 KHAVEWPAPEEETRKADVTNSLDPANVLSTELNTW 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,054
Number of Sequences: 5004
Number of extensions: 35855
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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