Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C19
(472 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 112 2e-25
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 31 0.64
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 7.8
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 112 bits (269), Expect = 2e-25
Identities = 54/104 (51%), Positives = 70/104 (67%)
Frame = +1
Query: 85 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 264
+D K+P VPE++ + L ++ KRKEIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 265 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 396
DE+R+ + A+ GN+YVP EA+LAFVIRIRG+N VSPKVRK+L
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKIL 106
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 377 PRYARYCQLFRLRQINNGVFVRLNKAT 457
P+ + QL RLRQINNGVFVRLNKAT
Sbjct: 100 PKVRKILQLLRLRQINNGVFVRLNKAT 126
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 259 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLP 399
K RD +AR+ R+RG YY+P + + +P+ R LP
Sbjct: 483 KIRDTSSIARETRSRGPYYLPEVEVDQAEVHVPSGTSKTPRYRPTLP 529
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 187 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 312
R + +R+EI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 277 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 390
RL R + R NYY+ + +AF + I V + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +1
Query: 190 SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 297
S +KRK +FK ++ K+ ++++ D +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 187 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 312
R +I +R+E+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 306 ATVTSLSCQSDF-ITLLDAVFFDILFGSLKD 217
ATV+ S + F T L V+FD F SLKD
Sbjct: 6 ATVSGRSMRLSFGATALSGVWFDFYFSSLKD 36
>SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 392 TLRTLGDTWLTPRIRMTNASLASPGT**LPRLRACLANLISSRSLMRYSLTYCS 231
TL +L D + PR+ + SL PG +PRL L +L + R L S
Sbjct: 467 TLLSLTDPGVIPRLLLALLSLTDPGV--IPRLLLALLSLTHPEVIPRLLLALLS 518
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 202 KKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 336
KK KE+ + Q ++ + + D RLA + R R +P + ++
Sbjct: 967 KKAKELVSKQRQISTKFELMDNDLYRLAEKLRERKRLGLPEQEEV 1011
>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 178 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 336
++R ++R+E +R + +E R++ DE+R R+ +RG + E +L
Sbjct: 1148 MRREEKDARRREEEERRLRE--EEDRLRREDELRRKREDDDRGRRKLAEERRL 1198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,942
Number of Sequences: 59808
Number of extensions: 294511
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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