Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C18
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    28   1.0  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   1.4  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   5.5  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   5.5  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   5.5  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.5  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   9.5  

>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 389 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 508
           FDH K    G     K   ++ HC+   + I G  +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 478 QDCSSDTVCSSEHVLRTDE*ATA*QLHMIKTLIFDHHKPWILGDFCVISTDNFINNGVF 302
           Q C S    SS+ +L  ++   A Q+H  + +  D ++  +  D  V S ++F+NN  F
Sbjct: 108 QSCKSACENSSQSLLNVEQ-QYAQQVHFWEKIRTDIYREGLRSDAAVKSLNDFVNNVSF 165


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 333 PPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQTD 157
           P  I   T S +P ++   +SG  +T+        +S      GGP +T + SGP+  D
Sbjct: 135 PAPINSATASMSPANN---TSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHD 190


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 47  KTPDDKPGICVGLYNCEHITYMMLDKTRKSKMDYVRQSVCNGPE 178
           +T D KP + V  Y C+   Y +  + R+    ++  S C   E
Sbjct: 190 RTSDVKPSLTVNAYTCDRCGYEVFQEIRQK--TFLPMSECPSDE 231


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = -1

Query: 432 ELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQH 289
           E +S+   S  +  K+     T+HG W   ++ P ++ ++ ++  P++
Sbjct: 469 EKLSQWYKSDTLLGKIDKEADTNHGTWNFLLNLPLSLTISHITPLPEN 516


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 155 VERNPFYSFWSYLASYK*YAHSCTNRHK 72
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 490 RSFNQDCSSDTVCSSEHVLRT 428
           RSF Q CS++ +CS+E   R+
Sbjct: 472 RSFFQKCSAEFLCSNEPNFRS 492


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 385 LIFDHHKPWILGDFCVISTDNFINNGVFDSTTLVVA 278
           L+F + KP    + CV+ST NF  N +F+  + + +
Sbjct: 130 LVFGNLKP----NVCVVSTPNFEFNTIFEKLSTLTS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,871
Number of Sequences: 5004
Number of extensions: 49232
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)