Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C18
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 30 1.0
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 29 3.2
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 28 5.5
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 28 5.5
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 27 7.3
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 27 7.3
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 27 7.3
01_01_0256 - 2083973-2084816,2084922-2086093 27 7.3
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 27 9.7
03_06_0649 - 35289996-35290436 27 9.7
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 173 PETFSVCCGPPPEINPEDMTLNERCSRAVTA 265
P ++ C PE+ D L R SRA+TA
Sbjct: 30 PGSYEAACSADPELGTFDTALRRRASRAITA 60
>10_06_0143 - 11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = -1
Query: 414 PHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQHSLLLSSG----KAVTAL- 250
P+ SF+ +K + S+T +G + + P++ + + PQ + +G KA L
Sbjct: 1101 PNGSFLQAKTANSVTADYGESTNWGNDDPSVFIVDMVGGPQGEYQICNGYGAEKASQVLR 1160
Query: 249 EHLSLRVISSG--FISGGG 199
EH S ++ S FIS G
Sbjct: 1161 EHWSTYIVESDFEFISSSG 1179
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 522 VLYSPKRTF-FGVPSIKIAPVTQCAAVSTYFELMSEPPHSSF 400
+ Y P R + VPS I C V F ++ PP +SF
Sbjct: 85 ITYYPSRYWALAVPSFVIVATALCMVVYVGFNFLATPPPTSF 126
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1
Query: 342 VSFPPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQ 163
V+ P +I TVS + + AV A + + + + G S G P H N+SGPL
Sbjct: 577 VAEPQSIPAPTVSVRTTGGHVRGNVAAVKAAQIVPTQC-TDGLRSFGSPHHFTNLSGPLT 635
Query: 162 T 160
T
Sbjct: 636 T 636
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +1
Query: 403 AAMRW-LTHQFEVRAHCCTLC 462
AA+RW LTH E A CC C
Sbjct: 264 AAVRWGLTHHKESAADCCQAC 284
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 200 PPPEINPEDMTLNERCSRAVTAFPLESNN 286
P P +P ++ +E SRA +A LESNN
Sbjct: 99 PSPAASPSELGDDESWSRAPSAAELESNN 127
>01_06_0946 +
33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 338 DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAIL-IEGTPKN 499
D + +Y WL+ E S D + L GGS S+ + C+ A+L +E P+N
Sbjct: 752 DLNLLRYSWLLWKEGRSVDLLDQLLGGSFDYSEVL----RCIQVALLCVEVQPRN 802
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 200 PPPEINPEDMTLNERCSRAVTAFPLESNNECCGVEDTVVNKIVGG 334
PP + PED + R + V P+E + G+ D V ++GG
Sbjct: 290 PPIRVRPEDRPPDSRLAPQV---PVEDHFAQMGISDQPVQPVIGG 331
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 333 PPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGG 199
PP + T S+ LLL G+ ++ ++ R+ SG GGG
Sbjct: 297 PPPCMYATASARSDGLLLLCGGRDANSVVFVNARLHVSGGALGGG 341
>03_06_0649 - 35289996-35290436
Length = 146
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/60 (23%), Positives = 23/60 (38%)
Frame = +2
Query: 158 SVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESNNECCGVEDTVVNKIVGGN 337
S C PE + C P +N + + + E R V + C T++ + GN
Sbjct: 87 STCGSPEVTTACAQPAKYVNWDGVHMTEAMYRVVAGMFFQDGRYCHPPFSTLLARRNKGN 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,768
Number of Sequences: 37544
Number of extensions: 321225
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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