Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C17
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 1.1
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 1.1
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 1.5
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 26 2.0
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 2.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 2.6
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 4.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 4.5
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 24 6.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 6.0
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 24 6.0
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 24 7.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 7.9
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.6 bits (56), Expect = 1.1
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 33 DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKI 206
D +R +D + ++ L Y +A+ V + + A W NIN NE + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 1.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 103 WKYNKEISICFFANST 56
WKYN ++ C+ NST
Sbjct: 116 WKYNPDLDYCYLDNST 131
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 1.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 39 VRTDDSVEFAKKQIDISLLYF 101
++ D +V+ +KKQI SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 59 RVREKADRYFLIILPCSRTKSRFEIYNYF 145
++R+ A + II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 2.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 51 DSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVK 203
+S+ K + S+L + A++ N+ + S+ WSI N + Y+N +K
Sbjct: 98 NSIHNQLKDLSSSILSY-AQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLK 147
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 144 SASWSIENNINHYKNETAVKI 206
+ SWS ++ HYKNE A I
Sbjct: 276 NGSWSSTDDTKHYKNEWAESI 296
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 4.5
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +2
Query: 74 ADRYFLIILPCSRTKSRFEIYNYFR 148
A++Y + + PC+ T +FE++ ++
Sbjct: 94 AEKYSVTMEPCTYTDEKFEVFKKYQ 118
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 4.5
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 30 CDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNET 194
C P+ DDS+ K+ D LL F E HVS + ++A W E NI+ ET
Sbjct: 178 CAPIDLDDSII---KRDD--LLSFCNVEV-HVSPNAILNACWLSERNIHTDLYET 226
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/64 (20%), Positives = 29/64 (45%)
Frame = +3
Query: 48 DDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQ 227
DD + + +D+ Y++++ + +++ +SI +NE A K + K
Sbjct: 19 DDDDDMIEPYVDVENCYYNSKSLKEENPESALTSFYSIVEKCEGEQNEWAFKALKQITKI 78
Query: 228 NWLL 239
N+ L
Sbjct: 79 NFQL 82
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2
Query: 304 LNIMTASN*CVGFSGENGTDKGSSQFCFFIKIHIFTAVSFL*WFILFSILQLAE 143
++IM + GF+ + T+ S FF+ ++ + + L FI I AE
Sbjct: 1165 VDIMRSVMDITGFNNQPQTNASSGNAMFFVLFNLVSMIYILTLFIAIIISNYAE 1218
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 24.2 bits (50), Expect = 6.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 3 LALIFAPGLCDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSIT 140
+ALI APGL SV +++ID+ + +A NH + S T
Sbjct: 266 IALIDAPGLNTDSMKTTSVFACQEEIDVVVFVVNAE--NHFTLSAT 309
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 156 SIENNIN-HYKNETAVKIWILMKKQNWLLP 242
SI N+ H++N V +++ + W LP
Sbjct: 267 SIRRNLTKHFRNRVLVSLYVSCSSRVWSLP 296
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 7.9
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 141 ISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPFSPLNPTHQFEAVIMFNVLYSA 320
I+A S+ + H+K T K + K LL + PL P H + +F + S
Sbjct: 1363 INALESVHTSFQHFKLFTNTKQSLNQLKDCTLLLQKLKSCPLKPVHW---ISLFEITKST 1419
Query: 321 KDYD 332
+ D
Sbjct: 1420 EQLD 1423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,318
Number of Sequences: 5004
Number of extensions: 28367
Number of successful extensions: 94
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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