Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C17
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 32 0.11
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395... 32 0.11
01_01_0144 - 1316626-1316658,1317580-1318863 32 0.15
07_03_1390 + 26217623-26218370,26218435-26218934 31 0.26
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 31 0.34
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 29 0.79
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 28 2.4
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 27 5.6
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 27 5.6
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 26 7.4
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 26 7.4
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 26 9.8
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 32.3 bits (70), Expect = 0.11
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 153 WSIENNINHYKNETAVKIWILMKKQNWL 236
W + I+ Y N TA+ W++ K+ NW+
Sbjct: 44 WLVATLIDFYVNVTAISTWVIYKEVNWI 71
>05_05_0353 -
24338717-24338946,24339046-24339134,24339421-24339500,
24339768-24339902,24340231-24340461,24340540-24340634,
24340734-24340819,24341467-24341570,24341674-24341805,
24341883-24341999,24342170-24342229,24342779-24342820,
24342878-24342952,24343127-24343177,24343256-24343436,
24343548-24343594,24343710-24343775
Length = 606
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 96 YFHAREPNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPFSPLNPT 275
Y + EP ++KS T A + +N+N N + + ++ ++ + LL + PF L+P
Sbjct: 230 YAESTEPPMLAKSATRIAILGV-SNLNS-SNTRCINVSLMQQRGDSLLIMGSPFGILSPV 287
Query: 276 HQFEAV 293
H F ++
Sbjct: 288 HFFNSI 293
>01_01_0144 - 1316626-1316658,1317580-1318863
Length = 438
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 150 SWSIENNINHYKNETAV---KIWILMKKQNWLLPLSVPFSPLNPTHQFEAVIMFNVLYSA 320
+WS+ + H+K ET + IW LP +PFSPL + E IM+ VL
Sbjct: 303 TWSLSPDFKHWKEETTLTVGDIWASESFNQMGLPHVLPFSPLLGVN--EDGIMYAVLNHV 360
Query: 321 KD 326
K+
Sbjct: 361 KE 362
>07_03_1390 + 26217623-26218370,26218435-26218934
Length = 415
Score = 31.1 bits (67), Expect = 0.26
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 30 CDPVRTDDSVEFAKKQIDISLLYFHA--REPNHVSKSITISASWSIEN 167
C PV D + K+Q+ + LL + ++P+ SKS++ +A W +EN
Sbjct: 303 CMPVHAD--IIILKEQMRMQLLEYKLLRKKPSQDSKSVSTNADWKLEN 348
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 30.7 bits (66), Expect = 0.34
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 150 SWSIENNINHYKNETAV---KIWILMKKQNWLLPLSVPFSPLNPTHQFEAVIMFNVLYSA 320
+WS+ + H+K ET + IW LP +PFSP+ + E IM+ VL
Sbjct: 308 TWSLSPDFKHWKEETTLTVGDIWASESFNQMGLPHVLPFSPVLSVN--EDGIMYAVLNDV 365
Query: 321 K 323
K
Sbjct: 366 K 366
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 29.5 bits (63), Expect = 0.79
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 168 NINHYKNETAVKIWILMKKQNWLLPLSVP-FSPLNPTHQFEAVIMFNVLYSAKDY 329
N H + + K +++K +L + + FSP NP H+ + + F + K Y
Sbjct: 298 NCEHCRQKVVAKKRFMIEKAPSVLTIHLKRFSPFNPRHKIDKKVQFQPTLNLKPY 352
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 106 AWKYNKEISICFFANSTESSVLTGSHNPGAKM 11
+W N++ + F N T++ VL HNP K+
Sbjct: 142 SWTLNEDKFLKSFTNRTKAVVLNSPHNPTGKV 173
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 117 NHVSKSITISASWSIENNINHY 182
NHVS+ I S W + NN + Y
Sbjct: 770 NHVSEQIQTSLPWDVHNNQHGY 791
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 26.6 bits (56), Expect = 5.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 24 GLCDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIE 164
G+C R DD++EF K L + EPN VS +I + + E
Sbjct: 237 GICQEGRVDDAIEFLKN------LPSYGCEPNTVSYNIVLKGLCTAE 277
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = +3
Query: 153 WSIENNINHYKNETAV--KIW--ILMKKQNW 233
WSI+ + NHYK+ V KIW + +K N+
Sbjct: 557 WSIQFDFNHYKDFDGVYFKIWKRVAKRKMNF 587
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 103 WKYNKEISICFFANSTESSVL 41
W YN++ CF + STE VL
Sbjct: 139 WMYNRKTWTCFLSYSTELEVL 159
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +3
Query: 72 KQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKIWI 212
KQI LL + + K + + N+ N++KN T +++ +
Sbjct: 1241 KQIAFHLLRLAVFRNDSIRKRAVVGLQILVRNSFNYFKNTTRLRVML 1287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,495,210
Number of Sequences: 37544
Number of extensions: 148530
Number of successful extensions: 359
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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