Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C17
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z81557-14|CAN99712.1|  321|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81557-13|CAB04530.2|  303|Caenorhabditis elegans Hypothetical p...    27   3.8  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   3.8  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   3.8  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   3.8  
U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81491-4|CAB04017.1|  252|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation r...    26   8.7  
U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation r...    26   8.7  
AF082011-1|AAD03023.1|  467|Caenorhabditis elegans UDP-N-acetylg...    26   8.7  

>Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical
           protein F53C11.1 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 222 KQNWLLPLSVPFSPLNPTHQFEAVIMFNV 308
           KQN+     V F+PL PTH +  V+ ++V
Sbjct: 280 KQNFPGEKFVSFTPLTPTHAYSNVLAYSV 308


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 157  LQLAEIVIDFET*FGSRA-WKYNKEISIC 74
            +Q  +I+ DFE  FGSR  WK   E  IC
Sbjct: 1296 VQKFQIISDFENYFGSRGLWKNYLEAMIC 1324


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 157  LQLAEIVIDFET*FGSRA-WKYNKEISIC 74
            +Q  +I+ DFE  FGSR  WK   E  IC
Sbjct: 1296 VQKFQIISDFENYFGSRGLWKNYLEAMIC 1324


>Z81557-14|CAN99712.1|  321|Caenorhabditis elegans Hypothetical
           protein F59A1.11b protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 201 KIWILMKKQNWLL-PLSVPFSPLNPTHQFEAVIMFNVLYSAKDYDTFYK 344
           +++I+ KK   LL  +++P   + P    +AVI + V+ S +D + F+K
Sbjct: 137 RLFIIKKKSLVLLYSIAIPLMLIGPIS--DAVIAYPVILSGQDMNVFFK 183


>Z81557-13|CAB04530.2|  303|Caenorhabditis elegans Hypothetical
           protein F59A1.11a protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 201 KIWILMKKQNWLL-PLSVPFSPLNPTHQFEAVIMFNVLYSAKDYDTFYK 344
           +++I+ KK   LL  +++P   + P    +AVI + V+ S +D + F+K
Sbjct: 137 RLFIIKKKSLVLLYSIAIPLMLIGPIS--DAVIAYPVILSGQDMNVFFK 183


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
           defective protein 27,isoform b protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 24  GLCDPVRTDDSVEFAKKQIDISLLYF 101
           G+  P+  DD  EF++K  DI   Y+
Sbjct: 30  GVSSPMENDDEPEFSQKHYDIEPCYY 55


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
           defective protein 27,isoform a protein.
          Length = 1129

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 24  GLCDPVRTDDSVEFAKKQIDISLLYF 101
           G+  P+  DD  EF++K  DI   Y+
Sbjct: 30  GVSSPMENDDEPEFSQKHYDIEPCYY 55


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 24  GLCDPVRTDDSVEFAKKQIDISLLYF 101
           G+  P+  DD  EF++K  DI   Y+
Sbjct: 30  GVSSPMENDDEPEFSQKHYDIEPCYY 55


>U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical
           protein C26F1.6 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 214 KIHIFTAVSFL*WFILFSILQLAEIVIDFET*FGSRAWKYNKEISICFFANSTESSV 44
           K+ I   + FL  +I   IL + EI +D ET  G   W  N   ++    NST + V
Sbjct: 228 KMMIMVVLVFLVCYIFSFILNIWEI-LDKETFGGDIGWFMNDINNVLIVVNSTSAIV 283


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 103 WKYNKEISICFFANSTESSVLTGSHNPGAKM 11
           + + KE+ + F    T S+VL G H    +M
Sbjct: 65  YSFMKEVEVAFMEQDTISNVLRGGHGEWCEM 95


>Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical
           protein F21F12.1 protein.
          Length = 192

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +3

Query: 21  PGLCDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWS-IENNINHYKNETA 197
           P     V+   S E  + Q+D+ L       P H+    TI AS S  +   ++   + A
Sbjct: 46  PSTSTNVQASQSQEQLQPQMDLKLRELLLSSPAHLFGLHTIPASGSNSQQPDDNNPPQAA 105

Query: 198 VKIWILMKKQNWLLPLSVPFSP 263
           V  W     +NWL  L+   SP
Sbjct: 106 VTSW-----ENWLCFLATNLSP 122


>Z81491-4|CAB04017.1|  252|Caenorhabditis elegans Hypothetical
           protein D1086.4 protein.
          Length = 252

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   ALIFAPGLCDPVRTDDSVEFAKKQI 80
           ++ FAPG+ + + TDD +EF    I
Sbjct: 165 SVAFAPGVYEDLSTDDDLEFLNSVI 189


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 126 SKSITISASWSIENNINHYKNETAVKIWI 212
           +K++   A WS      H+KNE  VKIWI
Sbjct: 601 AKNVMELALWS---GGEHFKNEQDVKIWI 626


>Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical
           protein F33H1.5 protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 238 SSQFCFFIKIHIFTAVSFL*WFILFSILQLAEIVID 131
           SS  CFF    +  A++   W +L S +    +++D
Sbjct: 105 SSSLCFFCHCFVCHAMAHSQWILLISFIYRYRVLVD 140


>U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation
           related protein 12,isoform a protein.
          Length = 467

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 102 GSIIRKYLSAFSRTRLNHQFSLGHITLGQK 13
           G + + YLS  S +  N  FSL  +TL QK
Sbjct: 287 GGMFKDYLSKISASSANIDFSLLPVTLVQK 316


>U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation
           related protein 12,isoform b protein.
          Length = 543

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 102 GSIIRKYLSAFSRTRLNHQFSLGHITLGQK 13
           G + + YLS  S +  N  FSL  +TL QK
Sbjct: 287 GGMFKDYLSKISASSANIDFSLLPVTLVQK 316


>AF082011-1|AAD03023.1|  467|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 467

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 102 GSIIRKYLSAFSRTRLNHQFSLGHITLGQK 13
           G + + YLS  S +  N  FSL  +TL QK
Sbjct: 287 GGMFKDYLSKISASSANIDFSLLPVTLVQK 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,869,828
Number of Sequences: 27780
Number of extensions: 149724
Number of successful extensions: 435
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)