Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C17
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    27   4.7  
At1g33720.1 68414.m04169 cytochrome P450, putative similar to SP...    27   4.7  
At5g67040.1 68418.m08452 hypothetical protein contains Pfam prof...    26   6.3  
At5g54930.1 68418.m06841 AT hook motif-containing protein contai...    26   6.3  
At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    26   6.3  
At3g11570.1 68416.m01413 expressed protein similar to At5g06230        26   8.3  
At1g12560.1 68414.m01457 expansin, putative (EXP7) similar to ex...    26   8.3  

>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 132 SITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPF 257
           S+  S  W++EN +N  + +   +I I +KK   L  + +P+
Sbjct: 472 SMVRSFDWALENGLNAEEMDMGERIGITLKKAVPLEAIPIPY 513


>At1g33720.1 68414.m04169 cytochrome P450, putative similar to
           SP|O64636 Cytochrome P450 76C1 (EC 1.14.-.-)
           {Arabidopsis thaliana}; contains Pfam profile PF00067:
           Cytochrome P450
          Length = 511

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
 Frame = -3

Query: 132 ISKRDLVRE----HGSIIR-KYLSAFSRTRLNHQFSLGHI 28
           I+ RD VRE    H  I+  +Y+S  +++  +H+FS+G I
Sbjct: 85  IASRDAVREVLKTHDQILSGRYISEATKSNNHHEFSVGWI 124


>At5g67040.1 68418.m08452 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 165

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 112 SRAWKYNKEIS-ICFFANSTESSVLTGSHNPGAK 14
           S+ + Y ++I  +C F  ++E+  LT S  PG K
Sbjct: 89  SKDFSYTEDIGDLCIFLGASEAFCLTASMYPGLK 122


>At5g54930.1 68418.m06841 AT hook motif-containing protein contains
           Pfam profile PF02178: AT hook motif
          Length = 286

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   LIFAPGLCDPVRTDDSV 59
           ++F PG CDPV  D+ V
Sbjct: 94  VVFKPGHCDPVSVDNDV 110


>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 115 GSRAWKYNKEIS-ICFFANSTESSVLTGSHNPGAK 14
           G  A  Y ++I  +C F  + E+  L  S+NPG K
Sbjct: 301 GEIAAYYTEDIGDLCIFFGNNETLCLEASNNPGLK 335


>At3g11570.1 68416.m01413 expressed protein similar to At5g06230
          Length = 427

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 217 IKIHIFTAVSFL*WFILFSIL 155
           IK HIF  +S L  F++FS++
Sbjct: 27  IKKHIFVGISLLITFLIFSVI 47


>At1g12560.1 68414.m01457 expansin, putative (EXP7) similar to
           expansin GI:2828241 from [Brassica napus];
           alpha-expansin gene family, PMID:11641069
          Length = 262

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 112 SRAWKYNKEISICFFANSTESSVLTGSHNPG 20
           S +W +NK  SI F   +     + G + PG
Sbjct: 5   SSSWSFNKFFSIVFVVFAISGEFVAGYYRPG 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,270,452
Number of Sequences: 28952
Number of extensions: 134563
Number of successful extensions: 346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)