Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   1.1  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.1  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    27   2.6  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.1  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   8.1  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   8.1  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 469 LXAFAAPYELCGAVTVSSPTAGGGSPPKTPTVLANTNLK 353
           L + A  Y     VT+SSPTA GGS   +  V+     K
Sbjct: 287 LDSVAQKYAARNGVTLSSPTAEGGSSSGSAAVIDEETFK 325


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +3

Query: 303 FDATRALLEAARRKAPNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLV 482
           F+A + +++A+  +A     +        G   P     L+  A +SS  A   +S  + 
Sbjct: 178 FEAWKRMMKASSGEAGAGNVITPGVTSTTGA--PSGKASLSRAASNSSTSARAGIS--VD 233

Query: 483 NDYARRGWADARAVRLPTVSVRGGAP 560
           + + +R  A A A  +P+VS  GG P
Sbjct: 234 SLFGKRSAAQAMATVVPSVSTPGGTP 259


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 455 GTIRTMWCSHSELADGRRGFAAENTDRAREYKPQVRRLTSGCL 327
           G  + +W SH++   G  G+ A    R   Y   V     GC+
Sbjct: 310 GLSKVVWDSHTQTPCGTMGYTAPEIVRDERYSKGVDMWALGCV 352


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 417 ELTVTAPHSSYGAAKAMSELLVNDYARRGWADARAVRLPTVSVRGGAPNLAVTS 578
           E  V +P S YGA   M     N      W++A A  +      G +P+   TS
Sbjct: 281 EYEVDSPMSQYGAIPFMQAHKPNSDVAVFWSNAAATWIDVEKESGPSPHSQSTS 334


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 421 SSPTAGGGSPPKTPTVL 371
           S+P + G +PP TP+VL
Sbjct: 237 STPVSVGSTPPSTPSVL 253


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 75  ENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGVAEQLVA 221
           E + P R SAL  T+V +  L    HA + +S  A   + P + +   A
Sbjct: 205 ELKSPSRPSALAETNVEELELDSLFHASNDISCSATSFSEPYILDHQAA 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,819
Number of Sequences: 5004
Number of extensions: 28406
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)