Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C16
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0371 + 7858170-7859624 42 3e-04
06_01_0272 + 2016836-2017963 39 0.003
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 38 0.008
02_05_1032 + 33637108-33638421 33 0.13
02_05_1179 + 34761054-34761198,34761293-34761447,34761541-347617... 32 0.38
02_05_1161 - 34583072-34583249,34583363-34583715,34583820-345840... 32 0.38
07_03_1590 + 27960241-27961104 31 0.67
06_01_0610 - 4415080-4415461,4415872-4416851 31 0.67
09_04_0165 + 15274448-15277336 31 0.89
12_02_0029 - 12459565-12459804,12460013-12460121,12460507-124605... 30 1.5
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938... 30 1.5
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 29 2.7
08_01_0558 - 4892520-4892696,4893086-4893271,4893497-4893692,489... 29 3.6
07_01_0501 - 3745447-3746244 28 4.7
06_01_0731 + 5380500-5380631,5380717-5380767,5381844-5381889,538... 28 6.2
02_05_1005 - 33445738-33446274 28 6.2
12_01_0910 + 8858443-8859414 27 8.2
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 27 8.2
>03_02_0371 + 7858170-7859624
Length = 484
Score = 42.3 bits (95), Expect = 3e-04
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Frame = +3
Query: 234 LFHLAAVVS-GHAEIDFDLGLRVNFDATRALLEAARRKAPNLRFVFASTVGVFGGEPPPA 410
+ HLAA HA +D +R N ALLEAAR P V+AS+ V+G
Sbjct: 197 VLHLAAQAGVRHALVDPMSYVRANVGGFVALLEAARMANPQPAIVWASSSSVYGLNSHVP 256
Query: 411 VGELTVT-APHSSYGAAKAMSELLVNDYARRGWADARAVRLPTVSVRGGAPNLAVTSF 581
E T P S Y A K E + + Y A+R TV G P++A F
Sbjct: 257 FSEHDRTDRPASLYAATKKAGEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFF 314
>06_01_0272 + 2016836-2017963
Length = 375
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +3
Query: 228 DVLFHLAAVVSGHAEIDFDL-GLRVNFDATRAL--LEAARRKAPNLRFVFASTVGVFGGE 398
D +++LAA H + F++ + AT AL LEA R + +R+ A + +FG
Sbjct: 114 DEVYNLAA--QSHVAVSFEVPDYTADVTATGALRLLEAVRLASKRIRYYQAGSSEMFGST 171
Query: 399 PPPAVGELTVTAPHSSYGAAKAMSELLVNDY 491
PPP E + P S Y AAK + +Y
Sbjct: 172 PPPQ-SESSPFHPRSPYAAAKVAAHWYTVNY 201
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 37.5 bits (83), Expect = 0.008
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Frame = +3
Query: 135 LSPKRHADSRVSTLAADVTAPGVAEQLVA--GADVLFHLAAVVSGHAEIDFDLGLRV--- 299
L+P R + + + D+ + + L+ D + H AA H + F
Sbjct: 50 LNPSRPSPN-FKFVKGDIASADLVNYLLTTESIDTIMHFAAQT--HVDNSFGNSFEFTKN 106
Query: 300 NFDATRALLEAARRKAPNLRFVFASTVGVFGGEPPPAV---GELTVTAPHSSYGAAKAMS 470
N T LLEA + RF+ ST V+G AV E + P + Y A KA +
Sbjct: 107 NIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGA 166
Query: 471 ELLVNDYARRGWADARAVRLPTVSVRG 551
E+LV Y R+ LP ++ RG
Sbjct: 167 EMLVMAY-------GRSYGLPVITTRG 186
>02_05_1032 + 33637108-33638421
Length = 437
Score = 33.5 bits (73), Expect = 0.13
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 321 LLEAARRKAPNLRFVFASTVGVFG-GEPPPAVGELTVTAPHSSYGAAKAMSELLVNDYAR 497
LLEA + P V+AS+ V+G + P P S Y A K E + + Y
Sbjct: 205 LLEACKDADPQPAIVWASSSSVYGLNDKVPFTESDRTDQPASLYAATKKAGEEITHTYNH 264
Query: 498 RGWADARAVRLPTVSVRGGAPNLAVTSF 581
+R TV G P++A SF
Sbjct: 265 IYGLSITGLRFFTVYGPWGRPDMAYFSF 292
>02_05_1179 +
34761054-34761198,34761293-34761447,34761541-34761723,
34761825-34762177,34762288-34762451,34762837-34762930,
34763898-34763958
Length = 384
Score = 31.9 bits (69), Expect = 0.38
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Frame = +3
Query: 153 ADSRVSTLAADVTAPGVAEQLVAGADVLFHLAAVVSGHAEIDFDLGLRVNFDATRALLEA 332
AD R+S ADV +G +FH+A+ VS D DL + V + TR ++ A
Sbjct: 62 ADQRLSLCRADVLDAASLRAAFSGCHGVFHVASPVSN----DPDL-VPVAVEGTRNVINA 116
Query: 333 ARRKAPNLRFVFASTVGVFGGEP---PPAVGELTVTAPH-------SSYGAAKAMSELLV 482
A R VF S+ G P P AV + T + + + Y AK M+E+
Sbjct: 117 AADMGVR-RVVFTSSYGAVHMNPSRSPDAVLDETCWSDYEFCRQTDNLYCCAKMMAEMTA 175
Query: 483 NDYARRGWADARAVRLPTVSV 545
+ A + + AV +P++++
Sbjct: 176 TEEAAKRGLEL-AVVVPSMTM 195
>02_05_1161 -
34583072-34583249,34583363-34583715,34583820-34584002,
34584096-34584250,34584346-34584493
Length = 338
Score = 31.9 bits (69), Expect = 0.38
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Frame = +3
Query: 153 ADSRVSTLAADVTAPGVAEQLVAGADVLFHLAAVVSGHAEIDFDLGLRVNFDATRALLEA 332
AD R+S ADV +G +FH+A+ VS D DL + V + TR ++ A
Sbjct: 63 ADERLSLCRADVLDAASLRAAFSGCHGVFHVASPVSN----DPDL-VPVAVEGTRNVINA 117
Query: 333 ARRKAPNLRFVFASTVGVFGGEP---PPAVGELTVTAPH-------SSYGAAKAMSELLV 482
A R VF S+ G P P AV + T + + + Y AK M+E+
Sbjct: 118 AADMGVR-RVVFTSSYGAVHMNPNRSPDAVLDETCWSDYEFCKQTDNLYCCAKMMAEMTA 176
Query: 483 NDYARRGWADARAVRLPTVSV 545
+ A + + AV +P++++
Sbjct: 177 TEEAAKRGLEL-AVVVPSMTM 196
>07_03_1590 + 27960241-27961104
Length = 287
Score = 31.1 bits (67), Expect = 0.67
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 276 DFDLGLRVNFDATRA-LLEAARRKAPNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYG 452
DFD + VN A+ A + AAR AP V T G P PAV ++T +
Sbjct: 126 DFDAMMAVNARASLAGIKHAARVMAPRRAGVILCTASAVGVLPLPAVATHSITKA-TIIA 184
Query: 453 AAKAMSELLVNDYARRGWADARAVRLPTV 539
+A +E L R AVR P +
Sbjct: 185 IVRAAAEPLARHGLRVNAISPGAVRTPVL 213
>06_01_0610 - 4415080-4415461,4415872-4416851
Length = 453
Score = 31.1 bits (67), Expect = 0.67
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +3
Query: 291 LRVNFDATRALLEAARRKAPNLRFVFASTVGVFG-GEPPPAVGELTVTAPHSSYGAAKAM 467
+R N +LLE+ + P V+AS+ V+G + P P S Y A K
Sbjct: 207 VRSNVAGLVSLLESCKDADPQPAVVWASSSSVYGLNDAVPFSEAHRTDKPASLYAATKKA 266
Query: 468 SELLVNDYARRGWADARAVRLPTVSVRGGAPNLAVTSF 581
E + + Y +R TV G P++A F
Sbjct: 267 GEAITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFF 304
>09_04_0165 + 15274448-15277336
Length = 962
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 474 LLVNDYARRGWADARAVRLPTVSVRGGAPNL 566
+++N Y R+GW + A L + RGG P+L
Sbjct: 861 IMINIYGRKGWIEGVANVLAELKSRGGEPDL 891
>12_02_0029 -
12459565-12459804,12460013-12460121,12460507-12460599,
12460965-12461208,12462302-12462338
Length = 240
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 132 SADAHPLTAAPRLAEGTRFPIDNQRDELRGSSAAGH 25
S HP+TA R+A GTR+ + E RG + H
Sbjct: 76 SVPGHPMTAHDRVAPGTRWFLGRNSVEQRGDDPSVH 111
>09_02_0435 -
9384225-9384412,9385084-9385133,9385209-9385274,
9385360-9385451,9385893-9385975,9386181-9386259,
9386888-9387115,9387196-9387297,9387719-9387854,
9387984-9388033,9389391-9389618
Length = 433
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 357 RFVFASTVGVFGG-EPPPAVGELTVTAPHSSYGAAKAMSELLVND 488
+ VF+S+ V+G + P E +T PH+ YG K ++E + D
Sbjct: 138 KLVFSSSAAVYGSPKNSPCTEEFPLT-PHNPYGRTKLIAEEICRD 181
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 183 DVTAPGVAEQLVAGADVLFHLAAVVSGHAEIDFDLGLRVNFDATRALLEAARRKAPNLRF 362
DVT G G D +FH+AA V D + VN +L+AA+R +
Sbjct: 403 DVTDEGSLATAFDGCDAVFHVAAAVEPWLP-DPSVFTTVNVRGLENVLKAAKRTPTVKKI 461
Query: 363 VFASTVGVFG 392
++ S+ G
Sbjct: 462 IYTSSFFAIG 471
>08_01_0558 -
4892520-4892696,4893086-4893271,4893497-4893692,
4893785-4893915
Length = 229
Score = 28.7 bits (61), Expect = 3.6
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +3
Query: 135 LSPKRHADSRVSTLAADVTAPGVAEQLVAGADVLFHLAA-VVSG---HAEIDFDLGLRVN 302
L +A R+ ADV G +AG D +FH+A+ V SG + E+D +
Sbjct: 60 LKALENAGERLRLFKADVLDYGSVAAAIAGCDGVFHVASPVTSGRPTNPEVDI---IATA 116
Query: 303 FDATRALLEAARRKAPNLRFVFASTVGVF 389
T +L A+ V +S V VF
Sbjct: 117 VTGTLNVLRASHEAKVKRVVVVSSVVAVF 145
>07_01_0501 - 3745447-3746244
Length = 265
Score = 28.3 bits (60), Expect = 4.7
Identities = 30/107 (28%), Positives = 41/107 (38%)
Frame = +3
Query: 177 AADVTAPGVAEQLVAGADVLFHLAAVVSGHAEIDFDLGLRVNFDATRALLEAARRKAPNL 356
AA+ A LVA A +L +S DFD + VN L A + P
Sbjct: 92 AAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTIAVNLRGAFLCLREAANRLPRG 151
Query: 357 RFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDYAR 497
+ A T V PP +S+Y A+KA E +V A+
Sbjct: 152 GRIVAITSSVVASLPP----------GYSAYTASKAAVEAMVRTMAK 188
>06_01_0731 +
5380500-5380631,5380717-5380767,5381844-5381889,
5383356-5383495
Length = 122
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 309 ATRALLEAARRKAPNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVND 488
A ++L A P L +F+ T +FG P +LTVT SY AA + S V+
Sbjct: 50 AITSVLHDATAVVPPL-LLFSGTSALFGAYALPTFAQLTVT----SYYAASSASHYAVSQ 104
Query: 489 YARR 500
R+
Sbjct: 105 ITRQ 108
>02_05_1005 - 33445738-33446274
Length = 178
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 387 FGGE---PPPAVGELTVTAPHSSYGAAKAMSELLVNDYARRGWADARAVRLPTVSVRGGA 557
+GGE P AV A H YGA + Y + W D+ V TV+ G
Sbjct: 100 YGGEAWQPSDAVAAWAEEAQHYDYGANACAAGKECGHYKQMMWRDSTQVGCATVTCSSGE 159
Query: 558 PNLA 569
+A
Sbjct: 160 TLMA 163
>12_01_0910 + 8858443-8859414
Length = 323
Score = 27.5 bits (58), Expect = 8.2
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +3
Query: 36 RRILGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGVAEQL 215
RR++ A +L + L +LLL + P L P + S ST P L
Sbjct: 43 RRLIAAHSRHFLALSSLLLLPLSLLLLSLPAPFLPPVSPSVSLRSTTTPQPALPLPLLAL 102
Query: 216 VAGADVLF---HLAAVVSGHA 269
VA A +L+ AA S HA
Sbjct: 103 VAAAALLYLAAFAAAAASAHA 123
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 177 AADVTAPGVAEQLVAGADVLFHLAAVVSGHAEIDFDLG 290
A D P +V+ D F A V+ G +E+D+DLG
Sbjct: 47 AVDKMPPNAVHPVVS-EDGRFGFALVIDGISEVDYDLG 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,177,279
Number of Sequences: 37544
Number of extensions: 273161
Number of successful extensions: 1324
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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