Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C16
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08) 64 1e-10
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 43 2e-04
SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088) 30 1.2
SB_5236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2) 28 4.8
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 28 4.8
SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_26356| Best HMM Match : Pkinase (HMM E-Value=0.00044) 27 8.5
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 8.5
>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
Length = 327
Score = 63.7 bits (148), Expect = 1e-10
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Frame = +3
Query: 180 ADVTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLGLRVNFDATRALLEAARRKAPN 353
ADV P + +V ++ + H +A++S E + L+VN + ++E R+ N
Sbjct: 79 ADVLDPQSLQSIVVNHNIDWIVHFSAILSAVGEQNVTQALQVNIEGFHNIIETCRKY--N 136
Query: 354 LRFVFASTVGVFGGEPP-PAVGELTVTAPHSSYGAAKAMSELLVNDYARRGWADARAVRL 530
LR ST+G FG E P ++T+ P + YG AK ELL Y R D R+ R
Sbjct: 137 LRLFSPSTIGAFGPETPMDNTPDITIQRPKTIYGVAKVHMELLGEYYHHRYGLDFRSARF 196
Query: 531 PTVSVRGGAPNLAVTSF 581
P V P T +
Sbjct: 197 PGVISGDSMPGGGTTDY 213
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +3
Query: 153 ADSRVSTLAADVTAPGVAEQLVAGADVLFHLAAVVSGHA-EIDFDLGLRVNFDATRALLE 329
++ R+ + D+ G Q ++ D + HLA++V A E D VN TR +++
Sbjct: 185 SNPRLQIINGDILDVGHLSQCISECDAVIHLASIVGYPACEKDPQKATEVNEQGTRNVVD 244
Query: 330 AARRKAPNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLV 482
A P V+AST +G E T +P + YG KA E +V
Sbjct: 245 AL---LPGQPLVYASTGSCYGAIEDGLCTESTPISPLTLYGKTKANGEEMV 292
>SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088)
Length = 695
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 87 PLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGVAEQLVAGADVLFHLAAVVSGH 266
P+R S D+ P+ P RH+D + + + P VA +LV + LA +++G
Sbjct: 536 PIRQSDHKHKDIPHPSSFPVRHSDHKHKDIPHPSSFPEVA-KLVDACSIQEPLARLIAGS 594
Query: 267 AEIDF 281
+DF
Sbjct: 595 VFMDF 599
>SB_5236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 274 STLISGCALTSTRRGRCSRQPDVR 345
+T +G +L STRRGR R+PD R
Sbjct: 40 NTRRTGLSLKSTRRGRLPRKPDFR 63
>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
Length = 671
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 66 YLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGVAEQLVAGADVLFHL 245
Y L CP+R++ALL H T HA + + LA T P + A D L H+
Sbjct: 387 YDLSRSCPVRINALL---SHMVTDGVSIHAANELLRLATRQT-PQTWKIADAVQDSLAHV 442
Query: 246 AAVVSG 263
V+SG
Sbjct: 443 LDVLSG 448
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 192 APGVAEQLVAGADVLFH-LAAVVSGHAEIDFDLGLRVNFDATRALLEAARRKAPNLRFVF 368
+P +AE V+ DV+ H A +S DF G N DA+ A EA +K L+ +
Sbjct: 2126 SPTLAETTVSEVDVVLHNKAQALSTEETFDFSSGDNTNLDASGA-TEAQFQKTNPLKRLD 2184
Query: 369 ASTV 380
TV
Sbjct: 2185 PVTV 2188
>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 453 AAKAMSELLVNDYARRGWADARAVRLPTVSVRGGAPNLAVTS 578
AAK ++L+ Y R W DA+ V + T + P + V +
Sbjct: 344 AAKKSLDVLIELYKRNVWKDAKTVNVITTACFSPVPKILVAA 385
>SB_26356| Best HMM Match : Pkinase (HMM E-Value=0.00044)
Length = 634
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/94 (23%), Positives = 38/94 (40%)
Frame = +3
Query: 72 LENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGVAEQLVAGADVLFHLAA 251
LE++C +S++L L+ + H D +S E AG +L+ L
Sbjct: 116 LESKCRQAISSVLSALEIVLALTTQAHKDIALSRTVVSKVFENAVE---AGKSLLYVLID 172
Query: 252 VVSGHAEIDFDLGLRVNFDATRALLEAARRKAPN 353
+ GH I D+G + L +A + P+
Sbjct: 173 ITLGHNAISDDIGKSMRQMTVELLDDAETYQVPD 206
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 285 LGLRVNFDATRALL-EAARRKAPNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAK 461
+G +N +A + EAA+ +L A +G F G P A+G L P + +GA
Sbjct: 1778 MGAALNTEAQPGVTPEAAQASGMDLNQ--APAIGTFPGVNPAAMGPLATQVPLAPFGAHP 1835
Query: 462 A 464
A
Sbjct: 1836 A 1836
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,365
Number of Sequences: 59808
Number of extensions: 242698
Number of successful extensions: 873
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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