Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C15
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174...    29   2.1  
08_01_0366 + 3236615-3236917                                           29   2.1  
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     28   2.8  
01_01_0658 - 5017219-5018066,5018572-5019085                           28   2.8  
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    27   4.9  
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720...    27   6.4  
08_02_0220 + 14418092-14418538                                         27   6.4  
09_06_0323 - 22337217-22337450,22338263-22339204                       27   8.5  
07_01_0775 + 5976883-5978109                                           27   8.5  

>09_01_0112 +
           1737438-1737777,1738441-1738511,1738974-1739052,
           1741559-1741641,1741733-1741784,1742038-1742105,
           1742279-1742345,1742426-1742505,1742576-1742640,
           1742785-1742847,1743271-1743427,1743511-1743588,
           1743677-1744219,1744321-1744497,1744534-1744788,
           1745270-1745329,1745874-1745888,1746123-1746135,
           1746819-1746934
          Length = 793

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 193 QQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQG 59
           QQQ     L  H +  A+ Q Q+P   + H +  P  ++ Q QQG
Sbjct: 673 QQQQKLLLLQQHQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQG 717


>08_01_0366 + 3236615-3236917
          Length = 100

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 189 CCPGILRQRRCRQRHFPTD 245
           CCP   R RRCR+RH   D
Sbjct: 30  CCPMRRRHRRCRRRHDDDD 48


>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 168 SGWQHSCCCPGILRQRRCRQRHFPTDICRHVGSDTVKPVQILMIEI 305
           SG + SCC  G+LR R C + H     C    +    P++   +E+
Sbjct: 66  SGGEPSCCAHGLLR-RACVRAHPAVAACAPAAAAASHPLRCRALEL 110


>01_01_0658 - 5017219-5018066,5018572-5019085
          Length = 453

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 240 LGNDAAGNDVAVICLGSSSCAASRYTCT 157
           LG  A G D+A  CL S +  A+ Y C+
Sbjct: 21  LGRVADGADIAAYCLASRAFLAASYACS 48


>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 280 GFTVSEPTWRQMSVGK*RCRQRRCRNMPGQQQLC 179
           G+T+ EP   Q++  K  C Q  C  M    +LC
Sbjct: 69  GYTLVEPAREQLNQNKRSCMQDGCSYMGSYGELC 102


>09_02_0589 +
           10969195-10969325,10971135-10971607,10971894-10972032,
           10972645-10972722,10972886-10973055,10973199-10973467,
           10973655-10973781,10973964-10974035,10975084-10975273,
           10975480-10975879
          Length = 682

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 237 GNDAAGNDVAVICLGSSSCAASRYTCTTEAKHW 139
           GND    D AV+ LG + C ASRY      + W
Sbjct: 23  GNDLHNGDAAVV-LGKTWCWASRYPGDQYDRFW 54


>08_02_0220 + 14418092-14418538
          Length = 148

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 198 LGSSSCAASRYTCTTEAKHWANDRRQ 121
           L S  CAA    CT  A  W +D R+
Sbjct: 87  LASVQCAAEAVECTAAAAEWDDDARR 112


>09_06_0323 - 22337217-22337450,22338263-22339204
          Length = 391

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 258 HGGRCQLGNDAAGNDVAVICLG 193
           H  RC+   D A ++VAV+C G
Sbjct: 209 HSTRCRFRADGAEHEVAVVCRG 230


>07_01_0775 + 5976883-5978109
          Length = 408

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 141 NAWLR*CRY-SGWQHSCCC 194
           +AW+  CRY  G  H CCC
Sbjct: 278 DAWVGICRYGEGTGHLCCC 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,191
Number of Sequences: 37544
Number of extensions: 175126
Number of successful extensions: 532
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)