Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C15
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)               29   1.6  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   2.9  
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                27   5.0  
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    27   6.6  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     27   6.6  
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
          Length = 447

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 163 LHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQGDPSRF 44
           +HY  Q   +R + +S +YHKS     RL +  +G P ++
Sbjct: 1   MHYLLQYAARRDSLLSLKYHKSIQLTRRLCKRIEGSPKKY 40


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 159 CRYSGWQHSCCCPGILRQRRCRQRHFPTDICRHVGSD 269
           CR S W ++  C  ++ Q    Q H  T +C  +  D
Sbjct: 340 CRVSTWSYNMPCLHMVLQHAVSQHHLTTCLCSQLAID 376


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 127 APISRRYHKSQHPRSRLQQVQQGDPSRFISYFLKNNHK 14
           AP  R   + +   SRL++ QQ  PS   ++  KNN+K
Sbjct: 112 APRQRERARERQRASRLRRKQQRQPSTTTAFVEKNNNK 149


>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 660

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 109 YHKSQHPRSRLQQVQQGD--PSRFISYFLKNNHKKLK 5
           ++KS H  +   Q +Q D  P   + YFLKNN   +K
Sbjct: 608 WYKSCHDSNLNGQYKQSDKDPKGMVWYFLKNNESTMK 644


>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 223 RQRRCRNMPGQQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQGDP 53
           +Q++ +    QQQ   Q L    + Q L Q+Q    ++  + Q  + +LQQ QQ  P
Sbjct: 17  QQQQQQQQLQQQQQQQQQLQQQQQQQQLLQQQQQQQQQLQQQQQQQQQLQQQQQQQP 73


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 223 RQRRCRNMPGQQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQGDPSR 47
           +QR+ R    QQQ+     +L  + Q   Q Q     ++HK    + R Q++Q   PSR
Sbjct: 259 QQRQQRQQLQQQQIQHHKQHLQQQRQQRQQLQQQ-QIQHHKQHLQQQRQQEIQPVQPSR 316


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 166 YLHYRSQALGQRQAPISRRYHKSQHPRSRL 77
           Y H R+Q L      I+   H+  HPR+R+
Sbjct: 190 YYHLRTQVLPSTHTGITIHAHRYYHPRTRV 219


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  RSRLQQVQQGDPSRFISYFLKNNHKKL 8
           + R Q  +QGDP  F+ +FL   H  L
Sbjct: 160 KKRFQFTKQGDPIEFLPWFLNALHTAL 186


>SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +3

Query: 108 YRRLIGACRWPNAWLR*--CRYSGWQHSCCCPGILRQRRCRQRHFP--TDICRHVGS 266
           Y   + AC+ PN  L    C   G QHSC C      + C + H P  T IC + G+
Sbjct: 241 YVSTVTACQ-PNPCLNGGLCSRFGTQHSCQCARGYSGKHC-EEHSPCGTSICMNGGT 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,536,060
Number of Sequences: 59808
Number of extensions: 193764
Number of successful extensions: 639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)