Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C15
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    28   3.3  
Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z72510-4|CAE17846.1|  116|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    27   7.5  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   7.5  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      27   7.5  

>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -2

Query: 223 RQRRCRNMPGQQQLCCQPLYLHYRSQALG--QRQAPISRRYHK--SQHPRSRLQQVQQ 62
           RQ+  + MP +++     +    ++Q     Q+Q  +++++H+   QH +S LQQVQQ
Sbjct: 136 RQQMQQPMPSRRRSAAHQVRQRIQAQNTVRLQQQEQLAQQHHQHQQQHAQSELQQVQQ 193


>Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical
           protein M106.4a protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/82 (21%), Positives = 37/82 (45%)
 Frame = -2

Query: 253 RQMSVGK*RCRQRRCRNMPGQQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQ 74
           +++ +G  R  +R CRN+P + Q   +   +   S+   +R + +      SQH  ++  
Sbjct: 13  KRVKIGA-RQSKRHCRNLPSELQRAKRTKAVSKVSEHTMKRSSSMLDINEDSQHSTNKAP 71

Query: 73  QVQQGDPSRFISYFLKNNHKKL 8
             ++    RF S  +  +H  L
Sbjct: 72  PPKKAPEDRFDSANMNGSHVTL 93


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 249  RCQLGNDAA-GNDVAVICLGSSSCAASRYTC 160
            +C   ND   G+D  +   G+++CAA++++C
Sbjct: 1164 KCDSDNDCGDGSDEKLEMCGNATCAANQFSC 1194


>Z72510-4|CAE17846.1|  116|Caenorhabditis elegans Hypothetical
           protein F53B7.7 protein.
          Length = 116

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 297 SLIFELALRCRSQHGGRCQLGNDAAGNDVAVICLGSSSCAASR 169
           S++  + + CR  H   C  G+D A ++   +C G++     R
Sbjct: 6   SILLVIVILCRDSHQMWCLDGSDCAISNTCSLCEGAACLRVQR 48


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 124 PISRRYHKSQHPRSRLQQVQQGDPS 50
           P+   YH  Q P   +   QQG P+
Sbjct: 188 PVQNEYHPQQQPHPAMMAPQQGPPA 212


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 124 PISRRYHKSQHPRSRLQQVQQGDPS 50
           P+   YH  Q P   +   QQG P+
Sbjct: 513 PVQNEYHPQQQPHPAMMAPQQGPPA 537


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 249  RCQLGNDAA-GNDVAVICLGSSSCAASRYTC 160
            +C   ND   G+D  +   G+++CAA++++C
Sbjct: 1164 KCDSDNDCGDGSDEKLEMCGNATCAANQFSC 1194


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 124 PISRRYHKSQHPRSRLQQVQQGDPS 50
           P+   YH  Q P   +   QQG P+
Sbjct: 513 PVQNEYHPQQQPHPAMMAPQQGPPA 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,709,619
Number of Sequences: 27780
Number of extensions: 143991
Number of successful extensions: 405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)