Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C15
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69280.1 68414.m07943 expressed protein                             28   3.1  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    26   9.4  
At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar t...    26   9.4  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    26   9.4  
At1g30840.1 68414.m03771 purine permease-related low similarity ...    26   9.4  

>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
 Frame = +3

Query: 129 CRWPNA-------WLR*CRYSGWQHSCCC 194
           CRWP+        WL  C +S W  SCCC
Sbjct: 339 CRWPSCDYNSSCGWLFCCHWSCW--SCCC 365


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 264 SQHGGRCQLGNDAAGNDVAV-ICLGSSSCAASRYTCTTEAKHWAND 130
           +QHG   Q   +   +++A  I   +++ AA+   CT + + W++D
Sbjct: 472 TQHGSDAQPVVNRVQSELATSIAASAAAAAAAELPCTVKLRMWSHD 517


>At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar to
           L-ascorbate oxidase from {Nicotiana tabacum} SP|Q40588,
           {Cucurbita pepo var. melopepo} SP|P37064; contains Pfam
           profile PF00394: Multicopper oxidase; supported by cDNA
           gi_15215753_gb_AY050406.1_; A false intron was added
           between exons 4 and 5 to circumvent the single
           nucleotide insertion in this BAC which, otherwise,
           causes a frameshift.
          Length = 571

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 213 VAVICLGSSSCAASRYTCTTEAKHWANDRRQ*AAGTINHSTP 88
           V  +   ++S A   Y    E K+W+ D ++ A  T+N   P
Sbjct: 9   VVAVLTHTASAAVREYHWEVEYKYWSPDCKEGAVMTVNGEFP 50


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 154  RSQALGQRQAPISRRYHKSQHPRSRLQQVQQGDPSRFIS 38
            R +     ++PI+RR+  SQ PR   Q  +  +P+  ++
Sbjct: 1494 REERSESMRSPINRRFRASQEPRYDHQSPRPAEPAASVT 1532


>At1g30840.1 68414.m03771 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profiles PF03151: Domain of unknown
           function, DUF250, PF00892: Integral membrane protein
          Length = 382

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 58  LLAALAVNVIGGAVIYG 108
           + A LA+NVIGG V YG
Sbjct: 297 MTALLAMNVIGGVVAYG 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,988
Number of Sequences: 28952
Number of extensions: 127652
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)