Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C14
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 36 0.024
11_04_0234 + 15187065-15188241,15188316-15188494 35 0.032
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.1
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 4.8
12_02_0292 + 16979550-16980662,16983249-16983731 27 6.4
05_03_0191 - 9521496-9521921 27 6.4
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 27 8.5
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 27 8.5
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 27 8.5
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 27 8.5
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 35.5 bits (78), Expect = 0.024
Identities = 31/135 (22%), Positives = 54/135 (40%)
Frame = +2
Query: 23 WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 202
W+ G P K+V+GI GR+W L + + P+ A + G + G +SY E+
Sbjct: 268 WLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV- 324
Query: 203 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 382
L G R + ++ S +Y G WV+++ K ++
Sbjct: 325 QWLAATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAAR 375
Query: 383 KNLGGVSIMDLSMDD 427
L G + ++ DD
Sbjct: 376 CGLLGYFLWPVNYDD 390
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 35.1 bits (77), Expect = 0.032
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Frame = +2
Query: 23 WIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 199
W+ G P KLV+GI GR+W L + D G P A G + G+++Y EI
Sbjct: 267 WLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEI 323
Query: 200 CAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVK 379
L K + +D ++ Y + G WVS++ K +V
Sbjct: 324 EEYL-------KSQSVFVTHD-NQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVA 368
Query: 380 TKNLGGVSIMDLSMDD 427
L G + +S DD
Sbjct: 369 KSQLLGYFLSTISFDD 384
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 53 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 208
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 405 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 286
M T P +A A GS +T PPSP GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 46 PQTCPWYQHHWTYVEARFR 102
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 34 WCAYPQTCPWYQHHWTYVEARFR 102
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 152 LHHPYRRVSVELRKFHCLNRASTYVQW 72
+HHPY+ + +RKF A V W
Sbjct: 206 VHHPYKPLVEAIRKFKVAQNALAQVAW 232
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 335 KKPRSHLHHXHQEGGRHR 282
++P+SH HH H G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 341 DPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDK 454
D + G A + G ++ ++D+FR LCTGDK
Sbjct: 71 DVEVGGEPAGRIVIGLFG--EVVPKTVDNFRALCTGDK 106
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 206 KLINPNQNGKRPHLRK 253
K I PN++GK PH+RK
Sbjct: 15 KTIPPNRHGKAPHVRK 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,960
Number of Sequences: 37544
Number of extensions: 343108
Number of successful extensions: 956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -