Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C13
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0964 + 12773450-12773467,12773578-12773820,12773934-127741... 32 0.36
08_01_0135 + 1068948-1069730 31 0.84
07_03_1307 - 25649979-25650027,25650146-25650378 31 0.84
06_03_0809 + 24814590-24816593 30 1.5
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 29 1.9
01_03_0113 - 12647599-12648052,12648078-12648319 29 1.9
03_01_0405 - 3140486-3140937,3141251-3141412,3141521-3141618,314... 29 3.4
03_01_0404 + 3138624-3140096 29 3.4
02_01_0662 - 4936695-4936803,4937353-4937684 29 3.4
07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929... 28 4.5
07_01_0438 + 3328992-3329519 28 4.5
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 28 4.5
12_02_0299 - 17051570-17052474,17053542-17053755 27 7.8
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 7.8
05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017... 27 7.8
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 27 7.8
02_02_0327 - 8983983-8985878 27 7.8
>03_02_0964 +
12773450-12773467,12773578-12773820,12773934-12774164,
12774286-12774378,12774463-12774650,12775601-12775794,
12775892-12776007
Length = 360
Score = 31.9 bits (69), Expect = 0.36
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +2
Query: 164 LPDAGEVFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGARY 343
+PD ++ D S G+G DDE A V ++D + + +R E+G R
Sbjct: 243 VPDLRDLNDVSDYVTKAGYGSES-EVDDEAATVSLASDVDKLNRASRKSAIRLQEIGPRM 301
Query: 344 NLHSSFVCAGGEEGKDMCTGD 406
LH V AG +C+GD
Sbjct: 302 KLHLVKVEAG------LCSGD 316
>08_01_0135 + 1068948-1069730
Length = 260
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 450 LYLLLLMGQASGPPPSPVHMSFPSSP 373
L LLLL +S PPP PV + P SP
Sbjct: 26 LSLLLLYSYSSSPPPPPVAFAVPLSP 51
>07_03_1307 - 25649979-25650027,25650146-25650378
Length = 93
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 338 RYNLHSSFVCAGGEEGKDMCTGDGGG 415
R ++ S+ C+GGE+G GDGGG
Sbjct: 10 RRSVPSTAACSGGEQGGRAAAGDGGG 35
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 429 GQASGPPPSP--VHMSFPSSPPAQTKELCRLYLAPSSV 322
G A+ PPP P +++F S+PP+ + YL +SV
Sbjct: 47 GTAASPPPPPCTAYLTFRSAPPSYASPITVSYLLNASV 84
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 381 SSPPAQTKEL--CRLYLAPSSVYL 316
SSPP TKE RLYL PS +YL
Sbjct: 44 SSPPRMTKEWRSIRLYLVPSVIYL 67
>01_03_0113 - 12647599-12648052,12648078-12648319
Length = 231
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -2
Query: 432 MGQASGPPPSPVHMSFPSSPPAQTKELCRLYLAPSSVYLSRSLQR 298
M AS PPP P +SPPA T R P + L RS R
Sbjct: 38 MAPASSPPPPPASPPSAASPPA-TSTASRSRTCPPPLALRRSQLR 81
>03_01_0405 -
3140486-3140937,3141251-3141412,3141521-3141618,
3141910-3142001,3142586-3142618
Length = 278
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 453 SLYLLLLMGQASGPPPSPVHMSFP 382
+L LLLLM + P P P H+SFP
Sbjct: 220 ALRLLLLMLSPASPLPPPDHLSFP 243
>03_01_0404 + 3138624-3140096
Length = 490
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 453 SLYLLLLMGQASGPPPSPVHMSFP 382
+L LLLLM + P P P H+SFP
Sbjct: 78 ALRLLLLMLSPASPLPPPDHLSFP 101
>02_01_0662 - 4936695-4936803,4937353-4937684
Length = 146
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 429 GQASGPPPSPVHMSFPSSPPA 367
G+ S PPPS VH++ P SP A
Sbjct: 24 GRRSPPPPSVVHVAPPRSPTA 44
>07_03_1519 +
27390204-27390590,27390591-27390809,27392516-27392962,
27393076-27393274,27393372-27393456,27393566-27393998
Length = 589
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/56 (26%), Positives = 19/56 (33%)
Frame = -3
Query: 413 HRHHPCTCLFPPPLXXXXRSYAGYTWRQARCT*VDHYNGYAPPYPVQSSLVLPQIH 246
H HHPCTC P + + D + + P P SS IH
Sbjct: 470 HWHHPCTCWCPHGCNRRHGTVTNIIYTHPDIILPDTSSSWLSPMPCLSSTATGTIH 525
>07_01_0438 + 3328992-3329519
Length = 175
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 444 LLLLMGQASGPPPSP-VHMSFPSSPPAQTKELCRLYLAPSSVYLS 313
L+L +GQ P P+P + P++PP + L+PSS +LS
Sbjct: 118 LVLTLGQQRQPAPAPAIDGDHPAAPP-HSPPADAFLLSPSSFFLS 161
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 423 ASGPPPSPVHMSFPSSPPAQTKELCRLYLAP 331
AS P P+P + +PPAQ R Y AP
Sbjct: 39 ASSPAPAPAKLPTKPAPPAQAVREARNYGAP 69
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 341 YNLHSSFVCAGGEEGKDMCTGDGGGPLACPISNN 442
YNL+S + GG + C G GGG P + N
Sbjct: 170 YNLNSLYYRPGGAKNGGQCGGTGGGGDVPPAALN 203
>10_08_1023 -
22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 423 ASGPPPSPVHMSFPSSPPAQTKELCRLYLAPSSVYLSR 310
AS PPP+P S PSSP A + A YL+R
Sbjct: 9 ASAPPPAP-DASSPSSPRASSASSSSSAAAEEPEYLAR 45
>05_07_0034 -
27200513-27200605,27200750-27200802,27201724-27201797,
27202762-27202830,27203070-27204148
Length = 455
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 490 LTAADAASDETSQLVPVIADGTSQWTTAITRAH 392
L AA AAS +LVPVIA G++ A+ H
Sbjct: 111 LAAATAASIAARRLVPVIAGGSNSLIHALLADH 143
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 444 LLLLMGQASGPPPSPVHMSFP 382
LLLLM + P P P H+SFP
Sbjct: 430 LLLLMLSPASPLPPPDHLSFP 450
>02_02_0327 - 8983983-8985878
Length = 631
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 426 QASGPPPSPVHMSFPSSPPAQTKELCR 346
Q+ GP P P + P SP A T L R
Sbjct: 207 QSQGPAPMPTLLQLPKSPVACTSGLSR 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,904
Number of Sequences: 37544
Number of extensions: 420606
Number of successful extensions: 1863
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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