Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C13
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17215.1 68417.m02589 expressed protein 33 0.17
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 0.93
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 1.6
At2g02870.1 68415.m00237 kelch repeat-containing F-box family pr... 29 1.6
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 29 2.8
At1g11020.1 68414.m01264 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At5g45180.1 68418.m05546 flavin-containing monooxygenase family ... 28 3.7
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ... 28 5.0
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ... 28 5.0
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 27 6.5
At4g18150.1 68417.m02697 hypothetical protein 27 6.5
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 27 8.7
>At4g17215.1 68417.m02589 expressed protein
Length = 150
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 213 LATQFLLSSKTSPASGKQIVFICASSSKGNAKWRKAMS 100
L T LLSS +SP G I F C + + +KW KA++
Sbjct: 44 LLTASLLSSSSSPIHGATIGFKCHTGHRRRSKWIKAVT 81
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 0.93
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 414 PPPSPVHMSFPSSPPA 367
PPPSPVH S P PP+
Sbjct: 682 PPPSPVHYSSPPPPPS 697
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 420 SGPPPSPVHMSFPSSPP 370
S PPP PV+ S P PP
Sbjct: 639 SSPPPPPVYYSSPPPPP 655
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 420 SGPPPSPVHMSFPSSPP 370
S PPP PV+ S P PP
Sbjct: 649 SSPPPPPVYYSSPPPPP 665
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 414 PPPSPVHMSFPSSPP 370
PPPSP H S P SPP
Sbjct: 770 PPPSPAHYSPPPSPP 784
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 423 ASGPPPSPVHMSFPSSPP 370
AS PPP+P + S P PP
Sbjct: 700 ASPPPPAPYYYSSPQPPP 717
>At2g02870.1 68415.m00237 kelch repeat-containing F-box family
protein weak similarity to Kelch-like protein 5
(Swiss-Prot:Q96PQ7) [Homo sapiens]; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 467
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 182 VFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGARYNLHSS- 358
VF S+ +N + +DD+ + K L++V R L+ Y+ SS
Sbjct: 15 VFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGEVRQTKSLKLMGFSIIYDSDSSD 74
Query: 359 FVCAGGEEGKDMCTGDG 409
+ +GGEE D GDG
Sbjct: 75 YSLSGGEEQADAAIGDG 91
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -2
Query: 453 SLYLLLLMGQASG--PPPSPVHMSFPSSPPAQTKELCRLYLAPSSVYLSRS 307
SL L+LL + + P PSPV +S PSS P +E+ L L+PS + SR+
Sbjct: 34 SLDLVLLSPKNNNGTPYPSPVSLSSPSS-PVTLREI--LLLSPSPLRKSRT 81
>At1g11020.1 68414.m01264 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 321
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 541 DPGAKGCQRCIYSWHVL 491
DP GCQ C Y W VL
Sbjct: 220 DPRMAGCQNCCYGWGVL 236
>At5g45180.1 68418.m05546 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P31513
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Homo sapiens}; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 453
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 366 APEGRREKTCARVMAVVHWLVP 431
A +G+ KTC V+ HW++P
Sbjct: 222 ANQGKEGKTCTMVVRTPHWVIP 243
>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 VGYKDPDGASPSSGD-VFTKDLHSPW 75
V Y D ++PSS + FT+D H PW
Sbjct: 282 VDYHHHDASNPSSSNSTFTQDHHHPW 307
>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 VGYKDPDGASPSSGD-VFTKDLHSPW 75
V Y D ++PSS + FT+D H PW
Sbjct: 282 VDYHHHDASNPSSSNSTFTQDHHHPW 307
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 429 GQASGPPPSPVHMSFPSSPPA 367
G+A+ PPPSP P+SPPA
Sbjct: 290 GEATSPPPSPT----PNSPPA 306
>At4g18150.1 68417.m02697 hypothetical protein
Length = 762
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 308 HY--NGYAPPYPVQSSLVLPQIHHPYRNDSS 222
HY +GY PY Q+ + L +HH Y+ +
Sbjct: 722 HYGGHGYVSPYHSQAVMSLEHLHHQYQQQQN 752
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 414 PPPSPVHMSFPSSPPAQ 364
PPPSPV P SPP Q
Sbjct: 423 PPPSPVQPPPPPSPPPQ 439
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,901
Number of Sequences: 28952
Number of extensions: 299270
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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