Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C12
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 28 0.74
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 1.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 1.7
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 3.0
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 25 5.2
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 5.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.9
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 6.9
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 24 9.1
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 24 9.1
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 0.74
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 28 VNVLSLSSGCGYCGDWVVADWPDTLSPLERT 120
+NVL L SGCG G + + +P L + T
Sbjct: 184 INVLELGSGCGIVGISIASKYPRALVSMTDT 214
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/44 (20%), Positives = 25/44 (56%)
Frame = -1
Query: 148 LRDYVTEMDASVPTGTKCLASQPLPSHHSTHNPN*EKERSPLER 17
++ ++ +DA++P + ++PL + +N N K+++ + R
Sbjct: 1528 VKSSISPLDANIPNSPSTITAKPLNDEKAINNENSVKQKTVITR 1571
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = -1
Query: 121 ASVPTGTKCLASQPLPSHHSTHNP-----N*EKERSPLERTAHFS 2
+S P + LPSH STHN + + + PL T HFS
Sbjct: 31 SSSPLPSNSCREYSLPSHPSTHNSSVAYVDSQDNKPPLVSTLHFS 75
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 258 DPILMHPDSHLSGQANPIPIHSRWN-KRKYFS 166
DP+ + +HL N +P+ WN KR Y S
Sbjct: 211 DPLFL---THLKAYPNTVPVPRHWNQKRDYLS 239
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 271 PIPIRSDPNAS*LTPLRPSKSDPNPQSM 188
P P+ SD N P KSDP+P S+
Sbjct: 47 PPPLFSDLNTGFPNRFHPPKSDPDPISI 74
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 149 HIMIYNEKYFLLFHRLWIGIGFAWPERCESG 241
H+M+Y+ L LW + ERC +G
Sbjct: 251 HVMLYHYYPSFLQSALWTAVSSYLEERCNNG 281
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 301 PILNKIPPADPIPIRSDPNAS*LTPLRPSKSDP 203
P+LN++ P +P+P R P + P P +P
Sbjct: 92 PLLNELVPEEPLP-REPPLPNEPVPEEPLPGEP 123
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 24.6 bits (51), Expect = 6.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 129 KWTRPFQRGQSVWPV 85
KW RP+ R ++V+PV
Sbjct: 971 KWDRPYTRERAVYPV 985
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 9.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -2
Query: 438 PESIITQI-HILYRRGIHPRDPSVRLIQKKNILASFPMSARARPNAI 301
P S + +I H R H PS R++ K S P+S RP I
Sbjct: 516 PISALAKIGHDALNRKNHASLPSRRIVYKPPSSPSTPISMNPRPKGI 562
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 24.2 bits (50), Expect = 9.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +2
Query: 161 YNEKYFLLFHRLWIGIGFAWPERCES 238
Y +L +W+ I WP++C S
Sbjct: 657 YEPNSEILLAGIWLCINILWPKQCTS 682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,055
Number of Sequences: 5004
Number of extensions: 46313
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -