Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C12
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 31 0.55
06_03_1150 + 28022633-28023374,28023501-28023565 31 0.55
02_05_0358 + 28264928-28266049 31 0.55
06_03_1210 + 28442253-28442967,28443338-28443405 29 1.7
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 29 1.7
11_06_0610 - 25449085-25453284 28 3.9
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 28 3.9
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 5.1
10_08_0808 + 20722479-20722585,20722674-20722959 27 5.1
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 27 5.1
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 5.1
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 27 6.8
10_06_0147 + 11242017-11242087,11242714-11242986,11243601-11243622 27 6.8
05_07_0033 + 27197654-27198196,27198297-27198359,27198844-271989... 27 6.8
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 27 9.0
07_01_0469 - 3552409-3553368 27 9.0
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 24 9.3
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 30.7 bits (66), Expect = 0.55
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 280 PADPIPIRSDPNAS*LTPLRPSKSDPNPQSMEQKK--ILFIINHYVLRDYVTEMDASVPT 107
PA P P S P + S + P P S Q K + +++ DY+T A P
Sbjct: 129 PAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLSMMSCADYLTNSSAQTPP 188
Query: 106 GTKCLASQPLPS 71
GT C + L S
Sbjct: 189 GTCCEGFKSLVS 200
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 30.7 bits (66), Expect = 0.55
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 280 PADPIPIRSDPNAS*LTPLRPSKSDPNPQSMEQKK--ILFIINHYVLRDYVTEMDASVPT 107
PA P P S P + S + P P S Q K + +++ DY+T A P
Sbjct: 129 PAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLSMMSCADYLTNSSAQTPP 188
Query: 106 GTKCLASQPLPS 71
GT C + L S
Sbjct: 189 GTCCEGFKSLVS 200
>02_05_0358 + 28264928-28266049
Length = 373
Score = 30.7 bits (66), Expect = 0.55
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -1
Query: 286 IPPADPIPIRSDPNAS*LTPLRPSKSDPNPQSMEQKKILFIINHYVLRDYVTEMDASVPT 107
+PP P I DP A+ + P PS + P+ S+ L II L +V S+
Sbjct: 4 LPPPAPPAIGGDPLAATIPPSLPSPA-PSSSSLNLSPSLLIIT--ALLAFVFFASVSIHF 60
Query: 106 GTKCLA--SQPLPS 71
+CLA S P PS
Sbjct: 61 LLRCLARPSHPAPS 74
>06_03_1210 + 28442253-28442967,28443338-28443405
Length = 260
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 189 IDCGLGSDLLGRRGVSQDALGSDRIGIGSAGGILFSIG 302
+ G + GR+G S DA G R G GG L+ G
Sbjct: 66 LPAGWSGRVWGRQGCSFDAAGRGRCATGDCGGALYCNG 103
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -3
Query: 311 LMQSDTKQDPSCRSDSDPIRS*CILTHTSP-----AKQIRSQSTVDGTKENTFHYKSLCA 147
++ SD Q PS +D CILT T+ Q++S + T +N +Y ++
Sbjct: 62 MLASDQIQQPSAEADRQSNGKACILTDTTRILRDLLSQVKSLRQENSTLQNESNYVTMER 121
Query: 146 T*LCYRNGRVRS 111
L NG +RS
Sbjct: 122 NELQDENGALRS 133
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 283 PPADPIPIRSDPNAS*LTPLRPSKSDPNPQ 194
PP P P S P+ P P+KS P P+
Sbjct: 965 PPPSPTPKSSPPSHEEYVPPSPAKSTPPPE 994
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 283 PPADPIPIRSDPNAS*LTPLRPSKSDPNPQ 194
PP P P S P+ P P+KS P P+
Sbjct: 915 PPPTPTPKSSPPSHEEYVPPSPAKSTPPPE 944
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 301 PILNKIPPADPIPIRSDPNAS*LTPLRPSKSDPN--PQSMEQKKI 173
P++++ P P ++ P+ ++P +P KS PN P +E+ +
Sbjct: 173 PVVSRTPTQAPHQPKAQPSVPKVSPPQPEKSPPNATPPKVERPSV 217
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 335 KDARMFFFWINRTEGSLGW 391
K R +F+W+ R +GS W
Sbjct: 804 KTRRAYFYWVTREQGSFEW 822
>10_08_0808 + 20722479-20722585,20722674-20722959
Length = 130
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 192 DCGLGSDLLGRRGVSQDALGSDRIGIG 272
DCG G D+ G GV LG G+G
Sbjct: 22 DCGSGGDIGGGEGVGHGGLGRLAEGVG 48
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 224 PAKQIRSQSTVDGTKENTFHYKS 156
PA+ R +VD T++NT HY +
Sbjct: 196 PARDDRIVDSVDNTRQNTLHYNA 218
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 344 RMFFFWINRTEGSLGW 391
R +F+W+ R EGS W
Sbjct: 782 RAYFYWVTREEGSFEW 797
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 305 ALGRARALIGKDARMFFFWINRTEGSLGW 391
A RA + K R++F+W R EGS W
Sbjct: 746 AAAARRAFMTK--RVYFYWCTREEGSFEW 772
>10_06_0147 + 11242017-11242087,11242714-11242986,11243601-11243622
Length = 121
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -1
Query: 358 KKKHPRILSDECARAS*CNPILNKIPPADPIPIRSDP---NAS*LTPLRPSKSDPNPQS 191
K +HP +L RAS P L PA P DP N+ P PS P+P +
Sbjct: 43 KPRHPSLLISSRRRASASPPGLPLTAPATMNPGALDPDTLNSKVADPAIPSLGAPDPSA 101
>05_07_0033 +
27197654-27198196,27198297-27198359,27198844-27198993,
27199079-27199150
Length = 275
Score = 27.1 bits (57), Expect = 6.8
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = -3
Query: 233 HTSPAKQIRSQSTVDGTKENT-FHYKSLCAT*L--CYRNGRVRSNGDKVSGQSATTQSPQ 63
HT+ AK S + G+ T H S T +R R NGD ++ + P
Sbjct: 13 HTAQAKSSPSAAPPAGSATRTRLHSFSFPTTFGWGTHRLLRCSKNGDSAPASASPPKQPH 72
Query: 62 YPQPELRERTFTVGTDR 12
P PE + T G R
Sbjct: 73 TPSPEKGQETSAGGASR 89
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 203 GIGFAWPERCESGCIRIGSDRNRIGRRDLV*YRIALGRARALIGK--DARMF 352
G FA+ C G +R+ S+ GR+ ++ R RA++ K +AR F
Sbjct: 389 GRAFAYGGWCSEGGVRLCSNPQEAGRKGMIKAGAGSRRLRAMLNKMMNARNF 440
>07_01_0469 - 3552409-3553368
Length = 319
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 337 LSDECARAS*CNPILNKIPPADPIPIRSDPNAS*LTPLRPSKSDPNP 197
L DE AR N L +P + IR+ P S P+R + NP
Sbjct: 162 LKDEIARLKRENAQLKGLPAPGGVRIRTTPRKSTTAPVRIQLAPRNP 208
>10_08_0943 + 21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 24.2 bits (50), Expect(2) = 9.3
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +1
Query: 4 RSARSVPT-VNVL---SLSSGCGYCGDWV 78
RS+ +VPT VN SL+ G +CG WV
Sbjct: 986 RSSSTVPTTVNSTDSGSLTCGPNFCGTWV 1014
Score = 20.6 bits (41), Expect(2) = 9.3
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = +1
Query: 64 CGDWVVADWPDTL 102
CG WV+ W L
Sbjct: 1020 CGTWVIEVWAQPL 1032
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,546
Number of Sequences: 37544
Number of extensions: 321737
Number of successful extensions: 923
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -