Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C11
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)                    29   2.2  
SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7)                   28   3.9  
SB_44828| Best HMM Match : MASE2 (HMM E-Value=4.1)                     27   5.2  
SB_51609| Best HMM Match : p450 (HMM E-Value=0)                        27   6.9  

>SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)
          Length = 384

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 126 GNSHETNDEKVTTSIINDGNLAYSVNDLGYKILIQKMQQNKNENIVISP 272
           G+ H+TNDE V   +   GN      D G  + I   ++   EN +I P
Sbjct: 11  GDKHKTNDESVYAEMTIAGNPIKFHVDCGASVYILPKKKYVTENNLIRP 59


>SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7)
          Length = 323

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 147 DEKVTTSIINDGNLAYSVNDLGYKILIQKMQQNKNENIVI 266
           DEKV  ++ NDG +   +  L YKI  Q+++  +NEN ++
Sbjct: 8   DEKVIETLKNDGEIRSEIIRLKYKI-GQELECLENENRLV 46


>SB_44828| Best HMM Match : MASE2 (HMM E-Value=4.1)
          Length = 358

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 325 VFPTLPRRVNANKPAIPVGEITMFSFLFCCIFCIKILYPK-SFTEYAKFPS 176
           V+PTLP    A  PA+P   + ++S L    F    +YP  SF   A +P+
Sbjct: 256 VYPTLPINSMAVYPALPFNSMAVYSTL---PFNSMAVYPTLSFNSMAVYPN 303


>SB_51609| Best HMM Match : p450 (HMM E-Value=0)
          Length = 526

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 396 TSWPLTGCLKHLGKNRGR*QVH---HRYFQRYQGELTPIS 286
           T WP    L  L KNRG  QVH     ++++Y+G    +S
Sbjct: 68  TPWPFISNLPALAKNRG--QVHLLLDEFYKQYEGPAIRLS 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,460
Number of Sequences: 59808
Number of extensions: 198807
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)