Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C11
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22475.2 68415.m02665 GRAM domain-containing protein / ABA-re...    27   4.2  
At2g22475.1 68415.m02666 GRAM domain-containing protein / ABA-re...    27   4.2  
At5g13260.1 68418.m01523 expressed protein                             26   9.8  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    26   9.8  

>At2g22475.2 68415.m02665 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 248

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 318 GNTYDELASALGFSQDVLGNRSKATKYFSE 407
           GNT+  L +A  F+   +G  +++TK F+E
Sbjct: 141 GNTWQHLRTAPSFADAAMGRIAQSTKVFAE 170


>At2g22475.1 68415.m02666 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 299

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 318 GNTYDELASALGFSQDVLGNRSKATKYFSE 407
           GNT+  L +A  F+   +G  +++TK F+E
Sbjct: 141 GNTWQHLRTAPSFADAAMGRIAQSTKVFAE 170


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 391 VAFDRLPKTSWEKPRALASSS*VFPTLPRRVN--ANKPAIPV 272
           ++F R P ++  KP+ +ASS+ V P    R +  AN PA+ V
Sbjct: 100 LSFTRNPSSTIAKPKPVASSAVVPPPKISRSSSPANSPAVSV 141


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
           2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
           and PF00569: Zinc finger, ZZ type; identical to cDNA
           p300/CBP acetyltransferase-related protein 2
           GI:12597460
          Length = 1691

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 SSGNSHETNDEKVTTSIINDGNLAYSVNDLG 212
           SSG++       +TTS +N GNL  S   LG
Sbjct: 154 SSGDATMAGSNNITTSAMNTGNLLNSGGMLG 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,148,659
Number of Sequences: 28952
Number of extensions: 141418
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)