Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C10
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.60 
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    29   0.79 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.4  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    27   3.2  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   4.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.7  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.7  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 193 HHQPKP*EGSKES*TTTWTCNTERKHRTLLAASRPSGATIQ 315
           +H P      +E   TT   N E  H TLL+  RPS  +++
Sbjct: 406 NHSPNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSME 446


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +2

Query: 137  KMAVPTVTLNELSDATQDNTINPSPKKVLKNPERLHGPAIR 259
            K+ +    L +++  T++ + +P+P  +  NP +  GP ++
Sbjct: 1121 KIVIKKAPLKQITSKTKEKSTSPTPPSITINPIKPKGPTLK 1161


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 187 LSSVRELVECYCWYC 143
           LS +++++EC CW C
Sbjct: 98  LSKIKKILECVCWNC 112


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 203 PSPKKVLKNPERLHGPAIRKGNTVHYWQQVVLRELPFRCHDRLLTIG 343
           P   KV+++ ER+HG  ++ G     W   VL   P +  +R L IG
Sbjct: 112 PKLTKVIEDIERIHGQDVKIGAYGFCWGAKVLITYPNK--ERFLRIG 156


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 182 TQDNTINPSPKKVLKNPERLHGPAIRKGNTVH 277
           T +  I+PS  +VLK P +L   AI   +T+H
Sbjct: 142 TPEGGISPSKPEVLKFPLQLKRAAIPSPDTIH 173


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 421 FRLRRQISTLLRLGYLYEDISWNFF 347
           F +   I T + +GY  ++I WNFF
Sbjct: 51  FSIALVIITQIYVGYKTKNIGWNFF 75


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 104 GNDSSCRIRSPGIHVRAPPPLSSIVP 27
           G+D+  ++ SP   + + PPL   VP
Sbjct: 62  GSDNDSKVSSPSREIPSDPPLPRAVP 87


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 23/81 (28%), Positives = 35/81 (43%)
 Frame = -1

Query: 517 FKRNN*IFYXXXKGSNFKTQDWGELRIPSSVVFRLRRQISTLLRLGYLYEDISWNFFCTD 338
           F R N  F+      +F T +  EL   S V+ + R      L L Y++  I  N++ T+
Sbjct: 343 FNRQNFRFHTQQSEDSFDTPEGVEL---SKVIKQYRDD----LNLSYVFGCIPKNYYMTE 395

Query: 337 CQQPIVTSEW*LPKDDLLPVV 275
                  S + L  D +LP V
Sbjct: 396 VSPQAEDSIFKLMVDHILPEV 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,729
Number of Sequences: 5004
Number of extensions: 47806
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)