Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C10
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0442 + 3134715-3135203,3135631-3135966                           28   5.8  
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    28   7.6  

>06_01_0442 + 3134715-3135203,3135631-3135966
          Length = 274

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 472 NFKTQDWGELRIPSSVVFRLRRQISTLLRL 383
           NF+ +DW  L      VF LR ++++ LR+
Sbjct: 182 NFRREDWRSLLFHGRSVFHLRNRLASQLRI 211


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 92  RNHCPFLISLLNKHCKMAVP-TVTLNELSDATQDNTINPS 208
           ++HC  L+ LL + C++ VP  V  NE      D T +P+
Sbjct: 92  KDHCNGLLLLLREECRLVVPWAVDCNENEYLVFDPTRSPN 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,496
Number of Sequences: 37544
Number of extensions: 309199
Number of successful extensions: 868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)