Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C10
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  
SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)                       28   5.9  

>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
 Frame = +2

Query: 86  GTRNHCPFLISLLNKHCKMAVPTVTLNELSD------ATQ-DNTINPSPKKVLKNPERLH 244
           G R   P    L NK    A P V + ELS       A Q +  ++P  +K    PERL 
Sbjct: 499 GNRLMSPTKELLTNKQQNKANPAV-IKELSRPPSSIRAKQGERVVSPKEEKEPVKPERLA 557

Query: 245 GPAIRK-GNTVHYWQQVVLRELPFR-CHDRLLTIGTEE 352
           GP++ K  +T      V L +   R  H+R  + G+EE
Sbjct: 558 GPSLNKRSSTAVQLVFVALMDNDLRPAHNRTSSTGSEE 595


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 161  LNELSDATQDNTINPSPKKVLKNPERLHGPAIRKGNTVHYWQQVVLRE 304
            L ELS  +QD   NPS  KV   P     P +++  T H+ Q    +E
Sbjct: 1374 LKELSSGSQDIVANPSDLKVYTIP-----PLVQESKTAHFAQSKESKE 1416


>SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   RQRAYLTREQWSSAVAAL*HGSPGCEF-GTRNHCPFLISL 121
           R+  Y+T++   SA+     G   CE  GT  HC FLI L
Sbjct: 322 REDHYMTKQIQKSALTYRSLGGRICEILGTATHCEFLIRL 361


>SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)
          Length = 1007

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 296 LRELPFRCHDRLLTIGTEEVP--RNIFVKISETEKSGDLTPQSKNDGTWDP 442
           LR+LP R +D +  +G E +P  R+     S  E++G+ T + K  G + P
Sbjct: 46  LRDLPSRLYDAVDALGEENIPKYRSGTKWCSVCERNGEETLKEKVPGKYVP 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,421,862
Number of Sequences: 59808
Number of extensions: 366700
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)