Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C10
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 520 NESTYRILCYINNYLVFIYNFILKLKPFFGNHFP 621
           N + Y    Y  NY++ I    + +  ++GN FP
Sbjct: 107 NNNNYNKKLYYKNYIINIEQIPVPVPVYYGN-FP 139


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 338 IGTEEVPRNIFVKISETEKSGDLTPQSKN 424
           +G EE+PR I +  +E    G++  + +N
Sbjct: 783 LGVEEIPRRIPMDATEVYLDGNVLRELQN 811


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 199 DGVILSSVRELVECYCWYC 143
           +GV+   +RE VEC C  C
Sbjct: 122 NGVMEIKIREPVECKCIKC 140


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 199 DGVILSSVRELVECYCWYC 143
           +GV+   +RE VEC C  C
Sbjct: 122 NGVMEIKIREPVECKCIKC 140


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 520 NESTYRILCYINNYLVFIYNFILKLKPFFGNHFP 621
           N + Y    Y  NY++ I    + +  ++GN FP
Sbjct: 332 NYNNYNKKLYYKNYIINIEQIPVPVPVYYGN-FP 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,765
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)