Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C10
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25330.1 68417.m03645 expressed protein                             30   1.6  
At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+ antipo...    29   3.6  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    28   4.8  
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    28   6.4  
At3g08710.1 68416.m01012 thioredoxin family protein similar to t...    27   8.4  
At2g17530.1 68415.m02028 protein kinase family protein identical...    27   8.4  
At1g79570.1 68414.m09276 protein kinase family protein low simil...    27   8.4  

>At4g25330.1 68417.m03645 expressed protein 
          Length = 229

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 146 VPTVTLNELSDATQDNTINPSPKKVLKNPER-LHGPAIRKGNTVHYWQQVV 295
           V T  + ++    +DN INP     LK   R LHG    +G     WQ+++
Sbjct: 165 VTTAKVGDICLRAKDNRINPKVVSFLKEARRKLHGETCNQGEETE-WQKIL 214


>At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+
           antiporter (NHX1) identical to Na+/H+ exchanger
           [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium
           proton exchanger Nhx1 [Arabidopsis thaliana]
           gi|4324597|gb|AAD16946; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 538

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 185 QDNTINPSPKKVLKNPERLHGPAIRKGNTVH-YWQQ 289
           QD+ I PS    +  P+ + G   R   TVH YW+Q
Sbjct: 469 QDSFIEPSGNHNVPRPDSIRGFLTRPTRTVHYYWRQ 504


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 122 LNKHCKMAVPTVTLNELSDATQDNTINPSPKK 217
           +NK C   +  +  ++L  AT DN + PSP K
Sbjct: 274 INKSCMNKLEVMIGHQLDQATLDNLLVPSPSK 305


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 385 DGEEWRFDAAVEKRRNLGSEVHPSL 459
           DG  W FD+A+E  RN  S   PSL
Sbjct: 43  DGFHWDFDSALEACRNQTSPFPPSL 67


>At3g08710.1 68416.m01012 thioredoxin family protein similar to
           thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
           thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
           {Nicotiana tabacum}; contains Pfam profile: PF00085
           Thioredoxin
          Length = 140

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 104 PFLISLLNKHCKMAVPTVTLNELSDATQDNTINPSPK-KVLKNPERL 241
           PF I L  KH  +    V ++ELSD +    I  +P    LKN +++
Sbjct: 65  PFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQI 111


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 454 WGELRIPSSVVFRLRRQISTLLRLGYLYEDISWNFFCT 341
           W + +    +  R  R    +L+ GY Y    W+F CT
Sbjct: 265 WADNKFAEEIQTRQYRAPEVILQSGYSYSVDMWSFACT 302


>At1g79570.1 68414.m09276 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925
          Length = 1248

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 272 VHYWQQVVLRELPFRCHDRLLTIGTEEVPRNIFVKISETEKSG 400
           ++Y  +VV  +LP    D L+++ +EE  +N+  + +E E  G
Sbjct: 224 IYYQTRVVKYQLPGEDLDALVSVSSEEDLQNMLEEYNEMENRG 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,948,665
Number of Sequences: 28952
Number of extensions: 248821
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)