Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C09
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.7  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 360 NFKQNSLLFFDKNIYRYLKKIQLR 431
           NFK+NS LFF K I   + ++ L+
Sbjct: 521 NFKKNSWLFFRKKIDSEMSEVLLQ 544


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 257 FSGLVSVSMNRSIRTIHSKYIPYKTYFI 340
           F  L+S+S+N ++R IH     Y+   +
Sbjct: 458 FQRLLSISLNENVRAIHKLISRYEARIV 485


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 367 LKFFKGYLMYKICFIRYIFRM--NCPD 293
           +KF      Y+ CF+R+I R+  N PD
Sbjct: 489 VKFINLVERYQSCFVRFIHRLVVNAPD 515


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 226  CKNSLINYFW 197
            CKNS  NYFW
Sbjct: 1815 CKNSFNNYFW 1824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,598
Number of Sequences: 5004
Number of extensions: 39832
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)