Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C09
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232           29   1.8  
04_04_0728 - 27608011-27608136,27608345-27608401,27608598-276086...    29   3.2  
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636...    28   4.3  
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     28   5.6  
01_05_0021 - 17224430-17224807                                         28   5.6  
06_01_0848 - 6463100-6463293,6463983-6465144                           27   7.5  
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050     27   7.5  
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559...    27   9.9  

>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
          Length = 549

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 165 NFSLCLPINTNLPYQCLQANGPRGPPSASKFWRPGRMTGLPPPLPEQALILVIT 4
           +FSLC  I        L A G     S    +RP       PP+PE  L+L++T
Sbjct: 20  HFSLCFAIGVFAALLPLAATGATSIDSIRASFRP--TVAATPPVPELDLLLIVT 71


>04_04_0728 -
          27608011-27608136,27608345-27608401,27608598-27608665,
          27608697-27608793,27610467-27610532,27610788-27611174
          Length = 266

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 67 PRANDRLAPPPPRAGAY 17
          PR N RLAP PP AG +
Sbjct: 15 PRGNRRLAPAPPAAGGF 31


>11_04_0179 +
           14562288-14562860,14562874-14563489,14563529-14563658,
           14563694-14564540
          Length = 721

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 147 PINTNLPYQCLQANGPRGPPSAS---KFWRPGRMTGLPPP 37
           P+   L  + L+ +  R PPSAS   K W+  R T  P P
Sbjct: 673 PVKPTLSAKKLEQSAQRKPPSASKPRKVWKEKRKTPAPSP 712


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 94  PPLRLQVLAPRANDRLAPPPPRAG 23
           PP       PRA   LAPPPP AG
Sbjct: 33  PPTATASRPPRAPRLLAPPPPLAG 56


>01_05_0021 - 17224430-17224807
          Length = 125

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 14  RISAC--SGRGGGKPVIRPGRQNLEAEGG 94
           RI AC  +GRGGG  ++ P    +E  GG
Sbjct: 22  RIPACVEAGRGGGIELVLPSGSGVETSGG 50


>06_01_0848 - 6463100-6463293,6463983-6465144
          Length = 451

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 400 IFLSKKSKEFCLKFFKGYLMYKICFIRYIF 311
           I L+   KE CL+F  GYLM   C +  IF
Sbjct: 402 ITLNLSLKEGCLQFPLGYLMTNECAVLLIF 431


>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
          Length = 709

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 166 EFFSLFTNKYQFTISMFTSKRAAGPPLRLQVLAPRANDRLAP----PPPRA 26
           E  S+   K+  + S   +    GPPLR+Q  AP A    A     PPPR+
Sbjct: 209 EIPSVLATKFNAS-SFLANADLCGPPLRIQCAAPTAPAAAAAFTPLPPPRS 258


>11_04_0027 -
           12453488-12453547,12454972-12455673,12455907-12455940,
           12456005-12456125,12456509-12457139
          Length = 515

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 139 YQFTISMFTSKRAAGPPLRLQVLAPRANDRL 47
           ++F   ++ S + + PP RL V  PR+N RL
Sbjct: 24  HRFRSPVYFSAKFSSPPFRLAVDIPRSNFRL 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,512
Number of Sequences: 37544
Number of extensions: 252683
Number of successful extensions: 1104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)