Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C09
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     28   4.4  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              28   4.4  
SB_6817| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  

>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 26.2 bits (55), Expect(2) = 3.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 58  NDRLAPPPPRAGAYSSY 8
           ND   PPPPR G Y  Y
Sbjct: 61  NDIPPPPPPRRGFYDDY 77



 Score = 20.6 bits (41), Expect(2) = 3.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 67 PRANDRLAPPPP 32
          PR  +R  PPPP
Sbjct: 44 PRDRERPPPPPP 55


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  GGKPVIRPGRQNLEAEGGPRGP 106
           GG P +RP  +   A  GPRGP
Sbjct: 100 GGMPKLRPAGERKAAGAGPRGP 121


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  GGKPVIRPGRQNLEAEGGPRGP 106
           GG P +RP  +   A  GPRGP
Sbjct: 12  GGMPKLRPAGERKAAGAGPRGP 33


>SB_6817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 145 NKYQFTISMFTSKRAAGPPLRLQV--LAPRANDRLAPPPPR 29
           N Y FT++ F +K    P  R  V  +     +R  PPPP+
Sbjct: 7   NNYTFTLTAFMTKIICAPSRRAAVENIIKAYGERHPPPPPQ 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,654,968
Number of Sequences: 59808
Number of extensions: 281172
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)