Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C09
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73896-6|CAA98055.1|  356|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical...    28   5.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    27   6.7  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical pr...    27   8.9  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    27   8.9  

>Z73896-6|CAA98055.1|  356|Caenorhabditis elegans Hypothetical
           protein F09E8.2a protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 339 IKYVL*GIYLE*IVLIDRFIDTDTKPLNLQTFIFY 235
           + YVL GI +  ++L+D +++ DT P   + F+ Y
Sbjct: 322 VLYVLTGITIVALILVDLYVNPDTIPDEAKRFLGY 356


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 102 PRGPPSASKFWRPGRMTGLPPPLPEQAL 19
           P G PS+S +  P      PPP+P+  L
Sbjct: 261 PDGAPSSSSYLAPAVPARAPPPVPQSPL 288


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 102 PRGPPSASKFWRPGRMTGLPPPLPEQAL 19
           P G PS+S +  P      PPP+P+  L
Sbjct: 441 PDGAPSSSSYLAPAVPARAPPPVPQSPL 468


>AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical
           protein Y73B3A.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 372 NSLLFFDKNIYRYLKKIQLR 431
           N LL F+KNI+R  K +QL+
Sbjct: 11  NDLLHFEKNIFRISKNVQLQ 30


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 93  PPSASKFWRPGRMTGLPPPLP 31
           PP  S+F  PG M G+PPP P
Sbjct: 319 PPPPSRFGPPG-MGGMPPPPP 338


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 93  PPSASKFWRPGRMTGLPPPLP 31
           PP  S+F  PG M G+PPP P
Sbjct: 329 PPPPSRFGPPG-MGGMPPPPP 348


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  GRGGGKPVIRPGRQNLEAEGGPRGP 106
           G  G +P+ RPG +    E GP GP
Sbjct: 253 GDDGERPLGRPGPRGPPGEAGPEGP 277


>U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical
           protein C28G1.3 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 214 LINYFWKFLANEGLICEFFSLFTNKYQFTISMFTS 110
           L NY W+  A  G   EF S   N  Q T + FT+
Sbjct: 636 LANYDWELPAAAGQASEFISDLINFLQTTFTSFTN 670


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  GRGGGKPVIRPGRQNLEAEGGPRGP 106
           G  G +P+ RPG +    E GP GP
Sbjct: 253 GDDGERPLGRPGPRGPPGEAGPEGP 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,338
Number of Sequences: 27780
Number of extensions: 235677
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)